Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03068 ATGAGTGAGAGTAACGGGAACAGTAGGAGGCCAAATGTTGAAGATCAAGATCTGGGACTGTACTTCTTGGAAGCTTGCAGGGGAAGGGAGATGAAGGAGAAGGAGAAGGAGAAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGCGCCGAGGGAGCTCAACACGATTAACAGCTCCGGTGGCTTCGTGGTGGTGTCAACGGACAAGCTGTCGGTGAAGTACACCAGCGTCAACCTTCACGGCCACGATGTCGGTGTCATTCAGGCCAACAAGCCTGCTCCTACCAAGCGCCTTATCTACTATTTCGAGATTCATGTCAAGGATGCCGGCGTCAAGGGTCAAATTTCCATTGGCTTCACCTCCGAGACATTCAAGATGCGAAGGCAGCCAGGGTGGGAGGCCAATAGCTGTGGCTATCATGGTGACGATGGTCTTCTTTACCGTGGACATGGCAAGGGGGAAGCGTTTGGTCCAACCTATACGTCTGGTGATGTAGTTGGTGCCGGAATTAACTACGCTGCGCAGGAATTCTTTTTCACTAAAAATGGCCAAGTTGTCGGCTCTGTTTACAAAGACTTGAAAGGCCCCCTTTTTCCTACTATAGCAGTTCATAGCCAAAATGAGGAGGTGAATGTCAACTTTGGGCAGAAACCATTTACTTTCGACTTAAAAGAATTTGAAGCACAAGAAAGAATGAAGCAGCAATTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTACGGAATTGTCCGTTCCTACCTGCTGCACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCTCAAGAAAGTGGAATTGATGAGCAGGAAATAACATATGCGTTAAATCATAGAAAGACTCTTCGGCAGCTAATCAGGAATGGAGACATTGATGTTGCATTTGGTAAATTGCGGGAATGGTATCCACAAATTGTTGAGGACAACACATCAGCTACATGCTTTCTTCTACATTGTCAAAAGTTTATCGAATTAGTTCGGGTTGGAGCGCTGGAGGAGGCAGTCAGATATGGAAGAATAGAATTGTCGAGTTTTTACGACTTGCCTGTCTTTAAAGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGGCCTCTAGAATCTTCCGTAGGCTATCTTCTAAAAGACTCGCAGCGTGAAGTTGTAGCTGACACGGTAAATGCCATGATTTTGTCCACAAATCCCAATATGAAAGAATCAAAACATTGTTTACAGTCTTATCTGGAGAGGTTACTTAGACAGCTAACTGCTTGCTGCTTAGAGAGACGAGCACTGAATGGGGAACAGGGAGAAGCTTTCCAACTTCAGAGATTACTTAGCAGTAGTAGAAGAGGCTAG 1401 0.4504 MSESNGNSRRPNVEDQDLGLYFLEACRGREMKEKEKEKEEEEEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTSVNLHGHDVGVIQANKPAPTKRLIYYFEIHVKDAGVKGQISIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEAFGPTYTSGDVVGAGINYAAQEFFFTKNGQVVGSVYKDLKGPLFPTIAVHSQNEEVNVNFGQKPFTFDLKEFEAQERMKQQLKIEEISVPPNVSYGIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGIDEQEITYALNHRKTLRQLIRNGDIDVAFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVRYGRIELSSFYDLPVFKDLVQDCVALLAYERPLESSVGYLLKDSQREVVADTVNAMILSTNPNMKESKHCLQSYLERLLRQLTACCLERRALNGEQGEAFQLQRLLSSSRRG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03068 466 SUPERFAMILY Concanavalin A-like lectins/glucanases 56 220 IPR013320 -
Viun11g03068 466 Pfam CTLH/CRA C-terminal to LisH motif domain 296 439 IPR024964 -
Viun11g03068 466 Coils Coil 27 54 - -
Viun11g03068 466 CDD SPRY_RanBP_like 84 214 IPR044736 -
Viun11g03068 466 PANTHER RAN BINDING PROTEIN 9-RELATED 49 442 - -
Viun11g03068 466 FunFam Ran-binding protein M homolog 27 228 - -
Viun11g03068 466 SMART ctlh 294 352 IPR006595 -
Viun11g03068 466 Pfam SPRY domain 98 215 IPR003877 GO:0005515
Viun11g03068 466 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 294 352 IPR006595 -
Viun11g03068 466 SMART SPRY_3 96 217 IPR003877 GO:0005515
Viun11g03068 466 ProSiteProfiles B30.2/SPRY domain profile. 30 218 IPR001870 -
Viun11g03068 466 MobiDBLite consensus disorder prediction 31 54 - -
Viun11g03068 466 Gene3D - 27 234 IPR043136 -
Viun11g03068 466 SMART toby_final6 348 449 IPR013144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03068 Viun-Chr11 41594473 41604413 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03068 K23334 - gmx:100805319 871.307