LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g03053	ATGGCTCAAGAACCCCAAAACCCACCTCCTCCTCAGGAAGTGCCCCCTCTTGTCGACCCTGTCCCTGTTGACAACCCACCCACCACCGAACCTCAGCCTGAACCTCAACCTGAACCTGAAGTCAAACCGCCCACCACCGAAGCTCAACCTGAAACTGAAACCCTGGAGAAGGCCCAGACCGCTGTTGAAGACAAGATTTCCGAATCGGTTTCGTTCAAGGAGGAGACCAACGTCGTCGGCGACCTCCCCGAGGCGCAGAAGAAAGCCCTTGATGAACTCAAGAAGCTTGTTCAAGAAGCGCTCAACAAGCATGAACTAACCGCGCCCAAGCCAGAACCAGAGAAGAAGAAGCCAGACATCGTCAAGGAGCCCGCAGAAGAAGCGGAGAAGAAGGAAGTTGAAGTGATCGAAGAGAAGAAGGAAGTTGAAGTGACCGAAGAGAAGAAGGATGTTGAAGTGACCGAAGAGAAGAAGGAAGTAGAAGTGACAGAAGAGAAGAAGGAAGTTGAATTGACAGAAGAGAAGAAGGATGTTGAAGTTAAGGAAGAGAAAAAGGAGGTTGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTTAAGGAAGAGAAGAAGGAAATCGAAGTAACAGAAGAGAAGAAGGAAGTAGAAGTGACAGAAGAGAAGAAGGAAGTAGAAGTGAAGGAAGAGAAGAAAGATGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGAGGGAAGAGAAGAAGGAAGTGGAAGTGACAGAAGAGAAGAAGGAAGTGGAAGTGACAGAAGAGAAGAAGGAAGTGGAAGTAACAGAAGAGAAGAAGGAAGAAGAGGTGACAGAAGAGAAGGAGGTGGTTGTTCCGGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGACGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGAGCGAGGGATTTCAAGGTAAAGGATGCCTTCACCATGCTCAAGAACACCGTGCGTTGGAGGAAGGAATTCGGAATCGACGCTCTGGTCCTCGAAGATTTCGGAACTGATTGGGACAAGGTGGTGTTCACCGAGGGACACGACAAACAAGGGCACCCCGTCTGCTACAACGTCTTCGGCGAGTTCGAGAATAAGGATTTGTACAACAAGACCTTTTCGGACGAGGAGAAGCGCAACAAGTTCATCAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTCGACTTCTCTCCCACCGCCATCTCCACCATTGTGCAGGTCAACGACCTCAAGAACTCTCCGGGACTCGGCAAGAGTAACCTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCCTTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCGGAAACCCTTTTCAAATATATTGCTCCCGAGCTGGTGCCCATTCAATACGGTGGATTGAGCAGAGAGGGTGAACAGGAATTCACCACTGCTGATCCTGTTACGGAGGTCACAATCAAACCAGCAACCAAACATGCTGTCGAATTCCCAGTTTCTGAGAAAAGCCACCTGGTTTGGGAAATCCGAGTGGTGGGTTGGGATGTGAGCTACCAAGCTGAATTTGTGCCCAGCGCTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCTCCCGCAGATGAGTCCGTGATCAGTAACGGTTTCAAAATCGGTGAAGCTGGCAAGGTAGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCAAAGACCAAACCCATCGCAGAGTGA	1893	0.4913	MAQEPQNPPPPQEVPPLVDPVPVDNPPTTEPQPEPQPEPEVKPPTTEAQPETETLEKAQTAVEDKISESVSFKEETNVVGDLPEAQKKALDELKKLVQEALNKHELTAPKPEPEKKKPDIVKEPAEEAEKKEVEVIEEKKEVEVTEEKKDVEVTEEKKEVEVTEEKKEVELTEEKKDVEVKEEKKEVEVTEEKKDVEVKEEKKEIEVTEEKKEVEVTEEKKEVEVKEEKKDVEVTEEKKEVEVREEKKEVEVTEEKKEVEVTEEKKEVEVTEEKKEEEVTEEKEVVVPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTVRWRKEFGIDALVLEDFGTDWDKVVFTEGHDKQGHPVCYNVFGEFENKDLYNKTFSDEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKSNLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPIQYGGLSREGEQEFTTADPVTEVTIKPATKHAVEFPVSEKSHLVWEIRVVGWDVSYQAEFVPSAEDGYTVIVQKNRKIAPADESVISNGFKIGEAGKVVLTIDNQTSKKKKLLYRSKTKPIAE	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g03053	630	SUPERFAMILY	Supernatant protein factor (SPF), C-terminal domain	527	622	IPR036598	-
	Viun11g03053	630	MobiDBLite	consensus disorder prediction	1	79	-	-
	Viun11g03053	630	MobiDBLite	consensus disorder prediction	57	71	-	-
	Viun11g03053	630	ProSiteProfiles	GOLD domain profile.	494	625	IPR009038	-
	Viun11g03053	630	CDD	SEC14	349	513	IPR001251	-
	Viun11g03053	630	Coils	Coil	155	281	-	-
	Viun11g03053	630	MobiDBLite	consensus disorder prediction	102	128	-	-
	Viun11g03053	630	Coils	Coil	125	148	-	-
	Viun11g03053	630	MobiDBLite	consensus disorder prediction	1	44	-	-
	Viun11g03053	630	SMART	CRAL_TRIO_N_2	304	329	IPR011074	-
	Viun11g03053	630	PRINTS	Cellular retinaldehyde-binding protein signature	307	329	-	-
	Viun11g03053	630	PRINTS	Cellular retinaldehyde-binding protein signature	504	513	-	-
	Viun11g03053	630	SMART	sec14_4	347	515	IPR001251	-
	Viun11g03053	630	SUPERFAMILY	CRAL/TRIO domain	354	514	IPR036865	-
	Viun11g03053	630	SUPERFAMILY	CRAL/TRIO N-terminal domain	71	344	IPR036273	-
	Viun11g03053	630	PANTHER	PATELLIN-1	203	627	IPR044834	GO:0008289
	Viun11g03053	630	Pfam	CRAL/TRIO domain	352	512	IPR001251	-
	Viun11g03053	630	Gene3D	-	249	541	IPR036865	-
	Viun11g03053	630	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	343	518	IPR001251	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g03053	Viun-Chr11	41520536	41523421	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g03053	308	507	Acyl Lipid Metabolism Gene Families	AT1G55840	28.571	5.72e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g03053	K19996		-	gmx:100806382	615.15