Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03052 ATGGCCGAAAATGATTCAAACCCTCCTCCTCCAGCCGCTTCACCGCCTCAGGAGCCTCCTGTGCCTCCGTCACTATCATCGGAGAAAGATGCCAAAGTTGACGATGTAGTTGAAGAGAAGGTGAAGGCTGAGGAAGTGCTTGTGGGTGAAGAGAAAGACAAAGAGAAAGAGGAAGTAAAAGGAGGCGAGGAGGCGGTGGTGGTTGAAGAGGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAAGAGAAAGAGAAAGAGAAAGAAGAAGAGGTTACAGTAGGAGAGACAGAGAGCGAGTCGTTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAGAGAAAGGGCATCGAAGAGCTGAAGAAGGTGCTGAAGGAGGAGTTGGAGAAGAAGGAGGAAGGCGAAGTATCCATCTGGGGCGTCCCTCTCTTCAAGGACCAGAGGACTGACGTCATTCTTCTCAAGTTCCTGAGAGCGCGGGACTTGAGGGTCAAGGATGCTCTTCTGATGATTCACAACACTCTCCGATGGAGGAAGGAGTTCGGCATCGATGCGCTTTTGGAGGAAGATCTGGGAGAGGAGTTGGAGAAGGTGGTCTTCATGCACGGCCACGGAAGAGAGGGTCATCCCGTCTGTTACAACGTCTACGGAGAGTTCCAGAACAAGGAGCTCTACCATAAGGCCTTCTCCACCGAGGAAAACCGCACCAAGTTTCTCCGATGGCGGATTCAGCTGTTGGAGCGGAGCATCAGGAACCTGGACTTCTCTCCGGGAGGCATCAACACCATCTTCCAAGTCAATGACCTCAAAAACTCTCCCGGCCCTGCCAAACGGGAACTTCGCCTTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAGTTCGTCGCCAAACAGGTTTTCATCAATGTCCCTTGGTGGTATCTTGCATTCTATACCATGATCAATCCCTTCTTGACACAGAGGACCAAAAGCAAATTTATCTTTGCTGGACCATCCAAATCTCCCGATACTCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCGGTTCAGTATGGTGGCCTCAGTGTAGACTTCTGTGACTGCAACCCCGATTTCACCATGTCTGATCCTGTCACAGAAATTCCTATAAAGCCAACCACTAAGCAAACTGTCGAAATTGCTATCTATGAGAAATGCATTATTGTTTGGGAGCTGCGGGTGGTGGGGTGGGAGGTTACCTATAATGCTGAATTCAAGCCTGATGCTAAAGATGCATACACAGTTGTCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAACAGCTTCAAAGTTGGTGAATTGGGAAAGTTATTGCTCACCATAGACAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAATATCAAACCCTACTGTGATTGA 1434 0.4895 MAENDSNPPPPAASPPQEPPVPPSLSSEKDAKVDDVVEEKVKAEEVLVGEEKDKEKEEVKGGEEAVVVEEEEKEKEKEKEEEKEKEKEEEVTVGETESESLKEESNRVSDSERKGIEELKKVLKEELEKKEEGEVSIWGVPLFKDQRTDVILLKFLRARDLRVKDALLMIHNTLRWRKEFGIDALLEEDLGEELEKVVFMHGHGREGHPVCYNVYGEFQNKELYHKAFSTEENRTKFLRWRIQLLERSIRNLDFSPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFIFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVTYNAEFKPDAKDAYTVVIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYRFNIKPYCD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03052 477 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 187 356 IPR001251 -
Viun11g03052 477 MobiDBLite consensus disorder prediction 28 110 - -
Viun11g03052 477 SMART CRAL_TRIO_N_2 148 173 IPR011074 -
Viun11g03052 477 Coils Coil 113 136 - -
Viun11g03052 477 Pfam CRAL/TRIO domain 196 356 IPR001251 -
Viun11g03052 477 Coils Coil 63 97 - -
Viun11g03052 477 MobiDBLite consensus disorder prediction 1 110 - -
Viun11g03052 477 SUPERFAMILY CRAL/TRIO domain 197 366 IPR036865 -
Viun11g03052 477 MobiDBLite consensus disorder prediction 8 23 - -
Viun11g03052 477 SUPERFAMILY CRAL/TRIO N-terminal domain 91 189 IPR036273 -
Viun11g03052 477 FunFam SEC14 cytosolic factor family protein 192 372 - -
Viun11g03052 477 ProSiteProfiles GOLD domain profile. 367 472 IPR009038 -
Viun11g03052 477 PANTHER PATELLIN-1 68 474 IPR044834 GO:0008289
Viun11g03052 477 Gene3D - 101 392 IPR036865 -
Viun11g03052 477 SMART sec14_4 192 359 IPR001251 -
Viun11g03052 477 CDD SEC14 196 357 IPR001251 -
Viun11g03052 477 Pfam CRAL/TRIO, N-terminal domain 118 172 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03052 Viun-Chr11 41514622 41516867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03052 152 351 Acyl Lipid Metabolism Gene Families AT1G55840 29.384 1.91e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03052 - - gmx:100804006 674.855