Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g03002 ATGGGTTTTCCGCAAAGGTTAAGGTTAGTGTTGATGATAAAAGTGTTGTTATTGATGAGTTGTGTAAATGTAAGGGGTTTGCAGCATAATTATGGAGAAGCCTTGTCAAAGAGCATATTATTCTTTGAAGGTCAGAGATCAGGGAAGCTGCCACCAACACAGAGAATGACTTGGAGGAAGGATTCTGCACTTCATGATCTCTATCTTCTCCCCCCACATACTCCTACTGCATTTCCTTTCCCTCACAAAGTTGACTTGGTTGGGGGTTACTACGATGCTGGTGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAACGACGATGCTGGCGTGGAGTGTAATCGAGTTCGGAAAATTCATGGGTCCAGATCTTAAACATGCATTAGACGCTATTCGTTGGGGCACGGAGTATTTTCTGAAAGCCACAAGCATCCCTGGAATAGTGTTTGCACAAGTTGGTGACCCTTATGCTGATCATAACTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTTTGCTGTTAGCAGGGACCACCCTGGCTCTGAAGTTTCTGCAGAGATTGCAGCAGCACTTGCAGCTTCTTCTATTGTGTTCAGGAAATATCACACTGCTTATTCTGCAAGACTTCTTCAAAGAGCCATAATGGTTTTCGAATTTGCTGATAGATACAGAGGATCATACAATGACAGTCTGGGAGAGTGGGTATGCCCATTCTATTGTGATTTTGGTGGCTACCTGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTGAAGGCTACTAAGCGCCCTTATTACTTGGATTACATTCATCAAAATATTCATAATCTGAAAAACTTTGCTGAATTTGGATGGGACACGAAGGACGCTGGCATCAACGTGCTTCTTTCAAAGCTTCTAATTAATAGCAGCTCAAATTCTAAGCCTTTCATCTTCAATGCGGACAAGTTTGTGTGTGGTGTGGTGCCTGAATCACCTTCAGTATCAGTCAAATACTCTCCTGGTGGCCTTCTATTCAAGCCTGGGGGAAGTAACTTACAGCATACAACAGCAATCTCGTTCCTGTTTCTGGTTTATGCTGGCTATATGAAGAAGACAAACAAAGAGATTGACTGTGGTGGAGAAGTTTTTGCTTCTCCAACCCGACTTAAACAAATAGCAAGAAGCCAGGTGGATTACATACTGGGAAGCAATCCACTCAATATGTCATACATGATTGGATATGGAGCAAAATACCCTGAAAAAATACATCATCGTGCGTCGTCATTGCCATCCGTGGATGAGTACCCTCCTCACATTGGTTGTAAAGAAGGATCATTTTATTTTGAAAGCCAAAATCCAAATCCCAATTTGCTCGCAGGAGCTGTTGTGGGAGGACCTTATTCGAACGATTTATACGCAGATTCTCGAGTAGATTTTGCACACTCTGAACCTACAACATACATCAATGCACCCCTTGTGGGTGTTTTTGCCTACTTCAATTCACATTCATCCTAA 1506 0.4316 MGFPQRLRLVLMIKVLLLMSCVNVRGLQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALHDLYLLPPHTPTAFPFPHKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWGTEYFLKATSIPGIVFAQVGDPYADHNCWERPEDMDTPRTAFAVSRDHPGSEVSAEIAAALAASSIVFRKYHTAYSARLLQRAIMVFEFADRYRGSYNDSLGEWVCPFYCDFGGYLDELVWGAAWLLKATKRPYYLDYIHQNIHNLKNFAEFGWDTKDAGINVLLSKLLINSSSNSKPFIFNADKFVCGVVPESPSVSVKYSPGGLLFKPGGSNLQHTTAISFLFLVYAGYMKKTNKEIDCGGEVFASPTRLKQIARSQVDYILGSNPLNMSYMIGYGAKYPEKIHHRASSLPSVDEYPPHIGCKEGSFYFESQNPNPNLLAGAVVGGPYSNDLYADSRVDFAHSEPTTYINAPLVGVFAYFNSHSS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g03002 501 Gene3D - 27 501 IPR012341 GO:0005975
Viun11g03002 501 SUPERFAMILY Six-hairpin glycosidases 13 499 IPR008928 GO:0005975
Viun11g03002 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 396 422 IPR018221 -
Viun11g03002 501 FunFam Endoglucanase 27 501 - -
Viun11g03002 501 Pfam Glycosyl hydrolase family 9 31 492 IPR001701 GO:0004553|GO:0005975
Viun11g03002 501 PANTHER ENDO-1,4-BETA-GLUCANASE 12 498 - -
Viun11g03002 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 469 487 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g03002 Viun-Chr11 41307032 41310056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g03002 10 501 Glycoside Hydrolase AT1G70710 59.073 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g03002 K01179 - gmx:100775752 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g03002 11 41307032 41310056 Viun11g03002 11 41307032 41310056 ECH