Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02978 ATGCCGTTAGAAGAAGACAAAAAGCACCATTCTTCTCTTCACTTTACACATTTTCATTCCTTCTTTCAAATTCACGCAACCACATCTCCGTTACCGTTGTGCCCTCCCAAACACCACGATCAAGCCAGAACGATGTCGTTTCGGTCGGAGAACGAGAACCCAAACCCTACCACTCCTGTTCCGCCATCGAAGAAGCGTTGGTCAGACTTATGGGCCAAATCGAAGCCCATAAACCAAATGGTCATGGCAATGAAGCTTCACTCTCTCTCTCCTCGCCGCGCCGCCAAAGCCAACGCCACTCTCTCTCCTTTCCCCGCCGCCGCCATCGCCGACAGAACCCTTCTCCTCTCCGACCAGATTCTCCTCAAAATCCTCGCACTCGTCTGCGACTCCCCCGCCCAGCGAAACTCCAATTCTCTGGTCTGCAAACGCTGGCTCAATCTCCAAGGCCGTCTCCTCCGCTTCCTCACAATCTCCGACTGGAACTTCCTCCTCTCCGGCAGACTCATCCACCGCTTCCCCAATCTCAACCACGTAGACCTGCTCTCCGCAGCCTTCGTTTCACCAGGCAATTCCGCCATTCTCCTCAGCCACCGCGTCCTCTCCGTGCACCTCCATTCCGACCTCGCCCCCAATTGGTGCTTCTGCCAGGAGAACATGCTCCCCGTCGAAGTCATCGACAACGGACTCGCCACCCTCGCTGCCGGCTGCCCTAACTTGCGCCGCCTCCACGTCATCGGCGCCAGCGAGATGGGGCTGCTGAGTGTGGCAGAGGAATGTCCCACTCTCCAGGAACTCGAACTGCAGTGCTGCAGCGACAACGTCCTGCGCGGCATTGCTGCCTGTGCGAATCTTCAGATTCTGAAGCTCGTTGGGCACGTTGATGGGCTCTACAGTTCCGTGGTTTCTGATATTGGGTTGACAATTCTGGCTCAGGGGTGCAAGAGGCTGGTGAGGTTGGAGCTTTGTGGTTGCGAAGGGAGTTTCGATGGGATCAAGGCCATTGGGAAGTGTTGCGTAATGTTGGAGGAGTTGACGTTTTCTGATCATAAGATGGATGATGGATGGCTTGCTGCTATCCCGTTTTGTGAGAATTTGAAGACTCTGAGGTTTCAATCTTGCAAGAGGATTGATCCAAATCCTGGAATGGAGGAGTATCTGGGTTCTTGCTCTGCTCTTGAAAGGTTGCATTTGCAGAAATGTCAGCTTCGGGACAAGAAAAGCGTTTCTGCTTTGTTTTCTGTGTGCAGAGATGTTAGAGAGATTGTTCTTCAGGACTGTTGGGGATTGGATAATAGTATCTTCTCTTTTGCAATGATGTGCAGGAGGGTAAGGTTGTTTTACTTGGAAGGGTGTTCATTACTAACGACAGAAGATTTGGAGAATGTGATTCATTCATGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGATTGCGAGATCTCTACTGCACTTGCAACCTTGTTTACCAGTCTCAAGGAACTGAGATGGAGTCCTGATACCAAATCACTTCTTCAATCCAGTGTTACAGGGATAACCATGGCAAAAAAAGGTGGTAAATTTTTCAAAAGGGCACGATAA 1596 0.5088 MPLEEDKKHHSSLHFTHFHSFFQIHATTSPLPLCPPKHHDQARTMSFRSENENPNPTTPVPPSKKRWSDLWAKSKPINQMVMAMKLHSLSPRRAAKANATLSPFPAAAIADRTLLLSDQILLKILALVCDSPAQRNSNSLVCKRWLNLQGRLLRFLTISDWNFLLSGRLIHRFPNLNHVDLLSAAFVSPGNSAILLSHRVLSVHLHSDLAPNWCFCQENMLPVEVIDNGLATLAAGCPNLRRLHVIGASEMGLLSVAEECPTLQELELQCCSDNVLRGIAACANLQILKLVGHVDGLYSSVVSDIGLTILAQGCKRLVRLELCGCEGSFDGIKAIGKCCVMLEELTFSDHKMDDGWLAAIPFCENLKTLRFQSCKRIDPNPGMEEYLGSCSALERLHLQKCQLRDKKSVSALFSVCRDVREIVLQDCWGLDNSIFSFAMMCRRVRLFYLEGCSLLTTEDLENVIHSWKELQSLRVVSCKNIKDCEISTALATLFTSLKELRWSPDTKSLLQSSVTGITMAKKGGKFFKRAR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02978 531 SUPERFAMILY RNI-like 150 292 - -
Viun11g02978 531 PANTHER UNCHARACTERIZED 115 490 - -
Viun11g02978 531 CDD F-box_AtTIR1-like 115 151 - -
Viun11g02978 531 MobiDBLite consensus disorder prediction 47 66 - -
Viun11g02978 531 FunFam F-box protein At5g51380 109 378 - -
Viun11g02978 531 SUPERFAMILY RNI-like 298 501 - -
Viun11g02978 531 Gene3D - 113 151 - -
Viun11g02978 531 Gene3D Ribonuclease Inhibitor 295 376 IPR032675 -
Viun11g02978 531 Gene3D Ribonuclease Inhibitor 378 520 IPR032675 -
Viun11g02978 531 Gene3D Ribonuclease Inhibitor 218 294 IPR032675 -
Viun11g02978 531 FunFam F-box protein 379 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02978 Viun-Chr11 41172024 41174256 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02978 K10268 - gmx:100812193 792.727