Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02952 ATGGGATTTGATAATGAGTGCATAGTGAACATTCAATCTCTTGCTGGAGAGTACTTCTGTCCTGTGTGTCGGCTGCTTGTATTTCCAAATGAAGCTTTGCAGTCACAATGTACTCATTTATACTGCAAGCCATGTTTGACATACGTTGTGAGCACTACAAAGGCTTGCCCATATGATGGTTACTTGGTCACTGAGGCAGATTCCAAGCCTCTGACAGAGTCAAATAAGACACTTGCTGAAACTATTGGAAAAATCACGGTTCACTGCCTTTACCATAGAAGTGGATGCACATGGCAGGGAAGTTTGTCTGAATGCACATCCCATTGTTCTGGATGTGCTTTTGGCAATTCCCCCGTAGTTTGCAATAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAACATGCACAAAATTGCCCTGGTGTGCAAGGTCAGGCACAACAGGTGACCACTACCCAGGATCCTTCAACTACTAGTGTCGTTGCTTCTACTGATCAGAACCAGAATGCTGCTCCTGTTGCAGCAACTGCTGCACAAGCTGCTGTTTCAACTACCATTCCTGGGCAGGTTTCTAATCAGCAACCCAATCTTACGCCCCAAACACAAGCTTTAGTTCAAACTACTGGGCAGCCAACGGCGGAGCAGTGGTATCAGCAGCAACAGTATCAACAATACTACCAACAATACCCTGGACAAGATCCATACCAACAGCAGTATCAACATTACTATCCCTATCAACAGTCCATGGTTCCACAGTACCAGCAGGCCTATAGTCAACCCCAACCTCAGTCTCAATCACAGCCCCAGGCCCAGCTTCAACCTCAGCCCCAGCCACAGGCCCAACACCAATCACAGCAGCCTCAACTCCAACAACAACCTCAGGCTCAATCTCAACCACTTTCACATATTCAGGCTCCGGTTGTCCCACCATCTCAGAATCAGATGCAAGTTCAACAACAACCCCAGCAACTTCAACCTGCTGTGCAGCCTCATGGACAGACGAGTCATGCACCTGGTCATTCCCTCCCTCAATCTCAGACTCAGCCCTATCCATATCCACAAGTTCAGCCTCATTCCGTCCAACCTCCACCTCAACCTCAACAGCCTATGCAAATTCCTCCATATCAGCAGCCTCTTCCTCAAATGCAGCATTCACAACCTCAAATTCAGCAACCAGTTCAGAAGTATCCTGTTCCTCAATCTCAAGCTCACGCACAACTGCAACCTAATGCTCCAGTTCAACATCCCTCTCAGCTCCCAATGCCTCCTCACCATCCTGTGACACCTAATGTCCAGCCTCAAGTGCAAAATGCAGCAACACCTTCAGTGACAGGACATCACTCTTATCCACAACCTCCGCCTCACCCAAATATGCAACCAGGAGTTCCTCAACATCCTATGCACGGGCATCCTCAAAGTGGGCACCAACCCCATGCTCAACACCCTGTCCAGATGCAAAATCAGTTTCCTCCACAAATTCCAACCATGCGTCCTAATCAATCTCATGCTATGTTTCCTAACCAGCAATCATCTGTTCAGGGACAAACTACCCCTCCTTTGCAACAACAGCCTGTGTATTCCCACAATCAACAACCTGGACAAATCAACCAACGTCCTACTCTGCAACCGGTTCAACAGATACCTCAACAGCAACCATTTGCACAGCACCAAATGCCTATGCCATCACATTTACGGCCACCGGGTCCAGCACATTCATTTCCCAAACAGGTGTATTCACAGCCACAGGGTAATATTGCACCATCAAATAGCATTCAGCAGAATCAATCTCAAAATACTGGAGGAAGGCCTTTAGTGCCTAACCATGCAGGACATCTACAGCCATTTGCTCAATCTGCCAATACTATTCCAGTTAGACATGGGCAAAATGGTGCTGGCTACTTGCTTGAAAATCAGAAATTGTTGGCTGGTACCAATAATCAAGTACAGTTGCCTTCTGAATTGCAGTCTAGGGCACCAGAAACAATTGAAAGACATGGTGATGTTGTCGAACAAACTGACTCTGCTGCTGCTAAACTGGGTAAAAATTTTAAAGATTTGGACACAGTGTCTGGATCAACAAATGAGTTGAAATCTGAAAAATTCGAAGCAAGTTTGAAACCAGTAGAGGTTGGGAACATGCAAAACAATGAAGATCCACACTCTATTAAGACTTCAGTCCCAAATGCCAATGCAGTGGAAAATGGTGATTCTGTGAATAAGAATCTTGGGATGGGGGCAGCTGCTGAAAGCAATTGGAAGCCTTCAGTTAGTACTAAATCTGGTGGTGCAATGCACGGGGTTCAAAATGACAGTAATGAGCATTCTGTCCAAGGCAATGAGTTTCAAGAAGGACATCCACTGAAGACAGAGACAAAACTAGCTGAGTCAGAAACTGATAAATTACAGAATGATGACAATTCTGCACCATCTAACTCTCAGAGCAACGGGGGGTTTGCTCAGCTGTCTCACTCGACCACTTTCACGGATCAAAGTAAGCATCAACAACAAATGACTAATTATGGGCCTTCTGTCCAGCAGAGATCTTCTGCAATATTAGGTTCACAATTGCCACATCCGACAATTCCAAACCAGTCACTCTCTTCATTGCACTCTTCAGCCCTTGTCAGGAATCATGGATCTGCCCATGATCCTCATACGGGACAGCCCTTAGCAGAGAGTTTTCCACCAACCATGTTTAAGCAACCACAAGATTCTGACATCACCCCTGGAAGGAGCTTTCAACCTCAGTCTCTTGGACCCCCGCAACCATTTAACCAAGTCCATGAGCCTCCTTTCCGCGCTGGAACTTCCAATTTGTCACGTCTTGGAGGGCCTCAATTTGGTGCACCACTTCCTGGAGATATGCATGGTCGAATGGCAGGCAACATACCACCACATGGTCCTGAAGGGTTTGGTTTGCATGATGATAGGTTCAAACCTTTCCTTGTTTCAAGTCAACAAAATATTGATAGAAGAGAGTATGATGACGATCTTAAGAAATTCTCTAGGTTGCCTTTGGATGCTGAGTCAATTTCTAAATTTGGAAATTACTCACTAAGTGCACATGAGTCTGGAAAGAGATCAGTTGGTATTCATGATGATGTCATTAAGAAATCAGGTTCTACGCTTCATCCTGGTTATCTTGGACCAGGTCCTGGATATGGGAGACATCATATGGATGGTATAACTCCTAGAAGTCCTGTTGGTGAATATGCTGAGATGTCTTCCCGGAGATTGGGGGCACACTCTGGTAGTCTTATTGGTAAGTCAGGTATAGATGATTTTGATGGCAGAGTTTCTCGTCATTTTGGTGGTGAGTTCCGTGATAGTCGGTTTCCTCATTTGCCTAGCCATTTGCATAGAGATGAATTTGATGGTTTTGGTAATTTCCGAATGGGTGAACATCCAAGAAGTGGTGATTTTATTGGTCAAGATGAGTTTGCTGGCCATTTTCGAAGGGGTGAACCTTTGGGTCCTCATAATTTTCCTAGACATTTGCAGCTTGGGGAGCCTGTTGGTTTTGGTGCCCATCCTGGTCATATGAGAGCAGTTGAACATGGCAGTTTTCGTAGTTTTGAATCTTTTGCTAAAGGCAACCGGCCAGGTCATCCCCAACTTGGTGAGCCTGGGTTCAGGAGCAGCTTTTCTCTTCCTGGATTTCCTAATGATGCTGGATTTTTAACAGGAGATATCAGGTCGTTTGATAATTTGAGGAGAAGGAAGACTTCCAGCATGGGGTGGTGCCGGATATGTAAAGTTGACTGTGAAACAGTAGAAGGTCTGGACTTGCATTCACAAACAAAGGAGCACCAGAAGATGGCTATGGATATGGTTAAGACAATCAAGCAAAATGCGAAGAAACAGAAGTTAATACCCAGTGAACAACCCACAGTTGATGACGGAAACAAGACACACAATACTGGTTTTGAGGGTCGTGGAAATAAGCATTGA 3954 0.4545 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTKACPYDGYLVTEADSKPLTESNKTLAETIGKITVHCLYHRSGCTWQGSLSECTSHCSGCAFGNSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQAQQVTTTQDPSTTSVVASTDQNQNAAPVAATAAQAAVSTTIPGQVSNQQPNLTPQTQALVQTTGQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQSMVPQYQQAYSQPQPQSQSQPQAQLQPQPQPQAQHQSQQPQLQQQPQAQSQPLSHIQAPVVPPSQNQMQVQQQPQQLQPAVQPHGQTSHAPGHSLPQSQTQPYPYPQVQPHSVQPPPQPQQPMQIPPYQQPLPQMQHSQPQIQQPVQKYPVPQSQAHAQLQPNAPVQHPSQLPMPPHHPVTPNVQPQVQNAATPSVTGHHSYPQPPPHPNMQPGVPQHPMHGHPQSGHQPHAQHPVQMQNQFPPQIPTMRPNQSHAMFPNQQSSVQGQTTPPLQQQPVYSHNQQPGQINQRPTLQPVQQIPQQQPFAQHQMPMPSHLRPPGPAHSFPKQVYSQPQGNIAPSNSIQQNQSQNTGGRPLVPNHAGHLQPFAQSANTIPVRHGQNGAGYLLENQKLLAGTNNQVQLPSELQSRAPETIERHGDVVEQTDSAAAKLGKNFKDLDTVSGSTNELKSEKFEASLKPVEVGNMQNNEDPHSIKTSVPNANAVENGDSVNKNLGMGAAAESNWKPSVSTKSGGAMHGVQNDSNEHSVQGNEFQEGHPLKTETKLAESETDKLQNDDNSAPSNSQSNGGFAQLSHSTTFTDQSKHQQQMTNYGPSVQQRSSAILGSQLPHPTIPNQSLSSLHSSALVRNHGSAHDPHTGQPLAESFPPTMFKQPQDSDITPGRSFQPQSLGPPQPFNQVHEPPFRAGTSNLSRLGGPQFGAPLPGDMHGRMAGNIPPHGPEGFGLHDDRFKPFLVSSQQNIDRREYDDDLKKFSRLPLDAESISKFGNYSLSAHESGKRSVGIHDDVIKKSGSTLHPGYLGPGPGYGRHHMDGITPRSPVGEYAEMSSRRLGAHSGSLIGKSGIDDFDGRVSRHFGGEFRDSRFPHLPSHLHRDEFDGFGNFRMGEHPRSGDFIGQDEFAGHFRRGEPLGPHNFPRHLQLGEPVGFGAHPGHMRAVEHGSFRSFESFAKGNRPGHPQLGEPGFRSSFSLPGFPNDAGFLTGDIRSFDNLRRRKTSSMGWCRICKVDCETVEGLDLHSQTKEHQKMAMDMVKTIKQNAKKQKLIPSEQPTVDDGNKTHNTGFEGRGNKH 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02952 1317 MobiDBLite consensus disorder prediction 752 785 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 431 447 - -
Viun11g02952 1317 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 1287 1305 - -
Viun11g02952 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 118 IPR013083 -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 416 430 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 356 377 - -
Viun11g02952 1317 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1023 1316 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 448 462 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 254 355 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 804 848 - -
Viun11g02952 1317 SUPERFAMILY RING/U-box 13 73 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 1287 1317 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 710 848 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 878 941 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 786 803 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 899 924 - -
Viun11g02952 1317 CDD RING-HC 18 57 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 378 415 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 710 738 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 254 609 - -
Viun11g02952 1317 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 478 558 - -
Viun11g02952 1317 SUPERFAMILY TRAF domain-like 84 168 - -
Viun11g02952 1317 MobiDBLite consensus disorder prediction 576 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02952 Viun-Chr11 41050693 41056690 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02952 - - gsj:114380210 1912.89