Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02894 ATGGATGGTTACGAAGCTACAAGAATTGTGTTTGCTAGGATCCAAAACTTGGACCCAGAAAATGCATCCAAAATCATGGGTGTACTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCTGAAGCACTTGTTCACTCTGTGATTCTCAAAGCACGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACACCCTCTACTCCTCCTTCTCCTTCGCCCTTCCTTTCCAGACAAAGCTCAACTTCTTCCAGGCTTGGTGCTATCAACCTACCCCCCGCTCTCACCATTCCAAACCCTTCTTCCACTTCCTCTTCGTGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGGTTGATGAGCCCCAACCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTACCCTTTTATGTCAACGGAGGCTCAGATCCAATTGATGACTTTCAGCTTCAGGATCAGCTTTCTTTCCTTAACGATGGTTCTCCTACTAGTACTGCTCTTGCTCACAAGACCAACAACCCAGATTTGTTTTACCCAGCTCACTCAGACTTGTCCTCAAGTCCTACTGGTGTTGCTGACCCTGCTCTCTTTCCCTCCTACGGTTGGGGAGGGTCACTTCATCGGAGGAGTTGCTCGGTCAATGATGCTTGTTTGGGCTCTGAGGACCCCAACTCCGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCCAGAGGGTACTGCAAGAATGGGACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCAGATGGGGCTGCTGCAATGGTAGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGGCTCTCCAACTTTTCCATACTCGCCTAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAGCGATACTCAAAGAGCGGCCGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGAATGGTGAACCCAGCTTCCAGGCAGATCTACTTGACTTTTCCAGCAGACAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGAGAATGTTTGGTTTTGTGACATTTGTTTATCCTGAGACTGTGAAGCTCATTCTATCTAAAGGAAATCCGCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCGGACAAGTACAGGAAGCAGCAGCAGGTAGAAAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGACTAGAGGCCAGAGACCAATTTGATCTTCAACTCGGAGGAAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTTCAGCAAGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCATTCTCCACTGGAAGTCCAATTCCTTCCCCCACACACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGGCCCCAAAGGCAGAGAGTGGTTCATCTTCTGCTCCAGCTAGTAGTACTGCATCAGTTTCTGCTGGTCAGCAGCAGCCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAACGGGGAGAATGGATATGATGAAGGCAGTGGCAAGCAGAGCCCTAGTCGTGAAGATCGGGAATTGCAAGAATGTTTGGAGCACAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAGGTGCAACTGCCAACTCTAAATTTGGTACTAGCGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTCAAATCCTATAACTGCCAAATTCCAAGGTTCTCTTCTAGTCATGGAACTATTGGGATGTTAGCAGGCACCGGTGGAGCAATTGGCATTTAG 2142 0.4743 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGAINLPPALTIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGSDPIDDFQLQDQLSFLNDGSPTSTALAHKTNNPDLFYPAHSDLSSSPTGVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMGSPTFPYSPKCMNLLLQQQQSDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQVERGDFSPCGTPTGLEARDQFDLQLGGRMFYNTQDMLWRRKLEEQADFQQALELQSRRLMGLQLLDIKKHHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHTSSEAPKAESGSSSAPASSTASVSAGQQQPVNISVGKEMVVNGENGYDEGSGKQSPSREDRELQECLEHNLPDSPFASPTKAAGGDFMVSFSNGPNEAIDADASGATANSKFGTSALLPPASALDMGTFKSYNCQIPRFSSSHGTIGMLAGTGGAIGI 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02894 713 MobiDBLite consensus disorder prediction 79 116 - -
Viun11g02894 713 MobiDBLite consensus disorder prediction 528 547 - -
Viun11g02894 713 ProSiteProfiles Zinc finger C3H1-type profile. 233 260 IPR000571 GO:0046872
Viun11g02894 713 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 258 IPR000571 GO:0046872
Viun11g02894 713 SMART rrm1_1 367 437 IPR000504 GO:0003723
Viun11g02894 713 MobiDBLite consensus disorder prediction 61 116 - -
Viun11g02894 713 SMART c3hfinal6 235 259 IPR000571 GO:0046872
Viun11g02894 713 CDD RRM_AtC3H46_like 368 437 IPR034365 -
Viun11g02894 713 MobiDBLite consensus disorder prediction 557 617 - -
Viun11g02894 713 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 373 444 - -
Viun11g02894 713 MobiDBLite consensus disorder prediction 557 590 - -
Viun11g02894 713 SUPERFAMILY CCCH zinc finger 236 258 IPR036855 GO:0046872
Viun11g02894 713 SUPERFAMILY RNA-binding domain, RBD 378 454 IPR035979 GO:0003676
Viun11g02894 713 Gene3D - 227 297 - -
Viun11g02894 713 MobiDBLite consensus disorder prediction 530 547 - -
Viun11g02894 713 MobiDBLite consensus disorder prediction 446 467 - -
Viun11g02894 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 423 IPR000504 GO:0003723
Viun11g02894 713 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 637 - -
Viun11g02894 713 Gene3D - 364 462 IPR012677 -
Viun11g02894 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 442 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02894 Viun-Chr11 40775056 40780828 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02894 - - gmx:100801341 1197.19