Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02864 ATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCCAAGCAGTCTTCTGGGAAAAATGAAAAGTCTGTGGAGAAGAATCAGCTGCAGTTTGGATCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGCAAAACTCATCAAAGGCATCAGTTAGTGCTCCGCCCTCTGATTCTCAGAAATGTAATGGAGTGAAAAATGATAATGATACTTCGTCTGAAGTGCCAGGAGCAATTAGAGAGAATGGCAGCATTACCAATTTCTCCACTAGACCCAGGAGTACGAGTAGTGTGAATGAAGTTGAAGAGAAAAATTCAAATTCTTTTACATTACTTGATGAAGATGGTCCCTCAAACAAGTTTTCAAATTTGAGCCTAGATGCTTCCGAGACTGAAAACTTGAGGAACGTACATAAAACTGGCAATGGAGATGATTCTTCATTAAAGTTCTCCCATCGAGAACCCGCAAAGGCACCTAATGGACATGCTGTTCTGCCTGTTAAAGACATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTTTGCTTTCTTAATGCAACCGTGCAGGCCCTGTTGTCATGCTCACCTTTTGTTCATCTTTTACAGCAATTAAGAACTCGCAACATTCCCAAGGTTGGATATCCTACATTGACAGCATTTGTTGAGTTCATAACCCAATTTAATGTGCCAAGCAACACTTACATAAACAGGCCAGATACGGATCTGTTTGAGTCTGGGAGGCCATTTTGCCCTGTTATGTTTGAAAGTGTTCTAAAAAATTTTACTCCAGATGTGCCAAACAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTCAAGCTTGAAGGACAATCTTCAAGTCGTAATGGCACCAAATTTTCTCTTGTTTCTTCTGTGGATGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTAACAAGGACTCAAAGCCTGGACCCATCAGAATTATCAGATATTTTTGGAGGAGAGCTTAAAAGTGTGGTGATAGCTGAAGGAAATAGACCTTCGGCCACTGTTCAACCGTATCTCTTACTCCATCTTGACATCTATCCTAACACTGTACACACTATCAAGGATGCACTTCGCTTGTTTTCTGCATCAGAAACTCTTGAAGGGTACCGTATATCGCCCGCTGCAAAGGCCGGTGTGGTGACTGCAAGAAAATCTGTACAAATAGAGACGCTTCCTAAAATAATGATATTGCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAACCACCAAGTTGCATAAGGCTGTGCACTTTCCTCTTGAGTTGGTATTGAGTCGTGATTTGCTTGTTTCACCATCTACTAAGGGTCGAAAGTATGAACTTGTTGCTACAATCACTCACCATGGAAGGGAGCCTTCCAAGGGGCACTACACAGCTGATGCCCGATACCCGAATGGTCGGTGGCTACGATTTGATGATGCATCTGTTTTTGCTATTGGAACAAATCAGGTGCTGCATGATCAAGCCTATGTCCTCTTCTACAGACAGCTGTGA 1593 0.4262 MLLFGSFTEDETRSLLSKQSSGKNEKSVEKNQLQFGSLNSVTVESNNLQNSSKASVSAPPSDSQKCNGVKNDNDTSSEVPGAIRENGSITNFSTRPRSTSSVNEVEEKNSNSFTLLDEDGPSNKFSNLSLDASETENLRNVHKTGNGDDSSLKFSHREPAKAPNGHAVLPVKDILPRGLINSGNLCFLNATVQALLSCSPFVHLLQQLRTRNIPKVGYPTLTAFVEFITQFNVPSNTYINRPDTDLFESGRPFCPVMFESVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSRNGTKFSLVSSVDDDEWETVGPKNKSAVTRTQSLDPSELSDIFGGELKSVVIAEGNRPSATVQPYLLLHLDIYPNTVHTIKDALRLFSASETLEGYRISPAAKAGVVTARKSVQIETLPKIMILHLMRFGYGSQGTTKLHKAVHFPLELVLSRDLLVSPSTKGRKYELVATITHHGREPSKGHYTADARYPNGRWLRFDDASVFAIGTNQVLHDQAYVLFYRQL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02864 530 Gene3D Cysteine proteinases 168 529 - -
Viun11g02864 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Viun11g02864 530 MobiDBLite consensus disorder prediction 1 106 - -
Viun11g02864 530 Pfam Ubiquitin carboxyl-terminal hydrolase 178 527 IPR001394 GO:0004843|GO:0016579
Viun11g02864 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 472 490 IPR018200 GO:0004843|GO:0006511
Viun11g02864 530 SUPERFAMILY Cysteine proteinases 171 528 IPR038765 -
Viun11g02864 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 529 - -
Viun11g02864 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 530 IPR028889 -
Viun11g02864 530 MobiDBLite consensus disorder prediction 10 106 - -
Viun11g02864 530 MobiDBLite consensus disorder prediction 140 163 - -
Viun11g02864 530 FunFam Ubiquitin carboxyl-terminal hydrolase 168 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02864 Viun-Chr11 40586132 40590709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02864 174 530 Miscellaneous Gene Families AT2G24640 27.273 4.15e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02864 K11841 - gmx:100799656 869.381