Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02862 ATGAATACGCTCCTTCCCCGAGTTCATCTTTCCGCTCCAATGAATTCAAAATCCAAACTTTGGACAAACCCAACATCAACATCAACCAGCTGTAGCAGTAGCAGCAGCAGCAGCATCAGCAGCGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATAGTTGTTCCTGCCTTCTTCAATTTCAATTCTCACCGATCACTCGCGGTTCTCTCCGGACACGTGGGTTCTGTTTCATGCTTGGCCCTGTGTGGTGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTAAGGGTCTTTGCAAAGTTCGGACAAGGAGAAGGGTCGGTGAAAGCTCTTGCAACGGTTGGGAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCAAGGAGCTCGGAGAACGTGTTCAAGCTTGTTGATTCTCTTCCCACGACCAAGGACTATCTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACGCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACTGTTTATAACGGGTTGATTTATTCTGGGTCGTGGGATAAGACTCTGAAGGTGTGGAGGCTCTCGGATTTGAAGTGTTTGGAATCGGTTAAAGCTCATGATGATGCAATCAATGGGCTTGTGGCGTGTAAAGGGGTGGTGTTTTCTGCTTCTGCCGATGGAAAGATTAAGGCTTGGGGGAGAAAAGAGGGGAAGGGGGAGCATTGTTTGAAGGGGGTTTTGGAGGGTCATAAAGATGTTTCTTTTAATGCTATTGTTGTTTCTGAGGATGGGAAATGGGTTTATGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGGGGTTCTGAGAGTTGGAAGCTGGTTTCTGAGACCAAAGCACATGAAATGGCTGTGTTGTGCATGTGTCTAATGGAGGAGTTTTTGTGCAGTGGATCAGCAGATAAAAGCATAGGGATTTGGAGAAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGTGTCATAAATGGCCATGAAGGGCCTGTGAAGTGTTTACAAGCCTCATCATCTAGTAGAATTGGTGGTGGTTTTTTATTGTACAGTGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTAGAGGATAATGGCTCTACACAATTTGGCACAGAGAATAAGTTCATGCTAGCATAA 1266 0.4676 MNTLLPRVHLSAPMNSKSKLWTNPTSTSTSCSSSSSSSISSENDDSPFCSQRIPIVVPAFFNFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRLSDLKCLESVKAHDDAINGLVACKGVVFSASADGKIKAWGRKEGKGEHCLKGVLEGHKDVSFNAIVVSEDGKWVYGGGSDGFVMGWEGSGGSESWKLVSETKAHEMAVLCMCLMEEFLCSGSADKSIGIWRREAFGKLCKVGVINGHEGPVKCLQASSSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNGSTQFGTENKFMLA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02862 421 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Viun11g02862 421 FunFam BnaA09g28200D protein 174 258 - -
Viun11g02862 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 223 IPR001680 GO:0005515
Viun11g02862 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 394 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 105 142 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 308 345 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 217 254 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 261 301 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 351 395 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 177 214 IPR001680 GO:0005515
Viun11g02862 421 SMART WD40_4 65 102 IPR001680 GO:0005515
Viun11g02862 421 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Viun11g02862 421 PRINTS G protein beta WD-40 repeat signature 129 143 IPR020472 -
Viun11g02862 421 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Viun11g02862 421 Gene3D - 16 165 IPR015943 GO:0005515
Viun11g02862 421 SUPERFAMILY WD40 repeat-like 63 398 IPR036322 GO:0005515
Viun11g02862 421 Gene3D - 270 411 IPR015943 GO:0005515
Viun11g02862 421 CDD WD40 68 394 - -
Viun11g02862 421 Gene3D - 173 269 IPR015943 GO:0005515
Viun11g02862 421 MobiDBLite consensus disorder prediction 19 45 - -
Viun11g02862 421 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 24 398 IPR045182 -
Viun11g02862 421 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Viun11g02862 421 Pfam WD domain, G-beta repeat 186 213 IPR001680 GO:0005515
Viun11g02862 421 Pfam WD domain, G-beta repeat 355 394 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02862 Viun-Chr11 40582278 40584169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02862 174 394 Miscellaneous Gene Families AT5G08390 23.581 2.39e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02862 - - gmx:100775295 699.893