Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02842 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGAGTTCATCTTACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGAAGTGACTTTGGATCCACACAGTATCAGATTGTTTCAACAAAATCTGTGATAGTTGCCAAGAAATCATCCAACTGCACTCCAACTTTTCCGGCATCGAACCGGCAGAATCAGTCCATCAAGGCTCTTAAGGAGCATGTTGATGATGCTGGTGCTGCTACCGTTGCGGATCCATGGTTTCAGAGTTTCAGTTCTAGTGACTTAGAAGTGGAAAGCTCAGAAATGGGTTATTCTGTGGAGGCTCTTCTTCTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTTGAAAGGGAAGTGCTAACAGAACGTTCTAGTAAATCGAAAATCCGTAGGAAAGTGGCAGCGGTGACATGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGAATGCCAAGCGGAAGACTGTGGTTAAAACCGGTGGTGCTGTGCAACTGAAGTCCAAAATCAGTCCAGAGCCTCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGAGTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTTATCCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGACTGAAGGAGAGACTGGGATGTGAACCCTCCGACGATGAAATTGCAACTTCATTGAAGATGTCTCGTACTGAACTACGAGAAAAAATGCTAGAGTGCTCTCTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAGAGATATGAAAACTCTGGTGCAGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTACGTTTACTGGTGGATACGTCAGGGTGTTTCAAAAGCCTTAATTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCGTTACTCCAACTATTGATAGGATTGCAAAACACCTTAACATGTCCCAAAAGAAAGTCAGAAATGCTACTGAGGCAATCAGCAAAACTATCTCGCTTGATAGAGAAGCATTTCCCTCTTTGAATGGCCTACGAGGAGACACTCATCATAGTTACATTGCAGATAATCGCGTTGAGAACATCCCGTGGAAGGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATGAATGTGACCCTTAAGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTGGGTAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGAATTGGAGGCAATGCTGTTGAAACATTAA 1521 0.4208 MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTQYQIVSTKSVIVAKKSSNCTPTFPASNRQNQSIKALKEHVDDAGAATVADPWFQSFSSSDLEVESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTERSSKSKIRRKVAAVTCSGVSARQRRMNAKRKTVVKTGGAVQLKSKISPEPLQNRLKGYVKGVVSEELLSHAEVVILSEKIKVGLSLEEHKSRLKERLGCEPSDDEIATSLKMSRTELREKMLECSLAREKLAMSNVRLVMSIAQRYENSGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALIENSRTLRLPAHLHERLSLIRNAKFRLEERGVTPTIDRIAKHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGDTHHSYIADNRVENIPWKGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGELEAMLLKH 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02842 506 Pfam Sigma-70 region 3 346 417 IPR007624 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 Pfam Sigma-70 region 2 269 334 IPR007627 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 ProSitePatterns Sigma-70 factors family signature 1. 291 304 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 CDD Sigma70_r4 433 491 - -
Viun11g02842 506 Gene3D - 422 500 IPR036388 -
Viun11g02842 506 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 190 337 IPR013325 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 NCBIfam sigma-70 family RNA polymerase sigma factor 263 493 IPR014284 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 Pfam Sigma-70, region 4 443 492 IPR007630 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 PRINTS Major sigma-70 factor signature 291 304 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 PRINTS Major sigma-70 factor signature 315 323 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 PRINTS Major sigma-70 factor signature 444 456 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 PRINTS Major sigma-70 factor signature 479 490 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 PRINTS Major sigma-70 factor signature 464 479 IPR000943 GO:0003700|GO:0006352|GO:0006355
Viun11g02842 506 Gene3D - 338 388 IPR036388 -
Viun11g02842 506 Gene3D RNA Polymerase Primary Sigma Factor 47 337 - -
Viun11g02842 506 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 117 503 - -
Viun11g02842 506 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 339 395 IPR013324 -
Viun11g02842 506 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 423 496 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02842 Viun-Chr11 40477543 40482314 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02842 K03086 - gmx:100801884 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02842 11 40477543 40482314 Viun11g02842 11 40477543 40482314 ECH