Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun11g02838 | ATGGCTGTTGAGACTTCTGATAAACCGAATTTACCTCATGATTTTGACGACGAAGATGATGCACCGATAATTTACAAAAGGTTTTCAAGTAAGAAAAATCAATCACATTCAGAAGCAAGGAAGTCAAGTACTCACATTCATGATGGACAGTCATATAGACAGGCTGCTAATGCACCTTCTTCGAATGGCCAGACTTCTAGCATGCAGAAAGGTAATACTGCCCCATCTCTTAAGCCATCAGCCATGAAGCCTTCTGTAGGTATCTCAAGAGCTCCAAATTCTGTTGGCAACACCTCCTCTGTGAAGTTGCCTGTAGCAAATTCAAAATCGATTTCATTAGCAGATAAGCAGAAAATGTCCATTGATGTCAAGGTGGAACCAAAATCTACTGAACACAGTGGTAAAGGTTTATGTGAAGATTCAGAAGATGACGAGGATGATAAACCGTTGAGTTTTAGGTTGAAAAATTCTAACCATAATAACAAAGTGACGTCTGTTGTCAAGAAATCTTATGAAGACTCTGATGATGATGATGATGTCCCTTTGGCAAAAAAGTTACCTCGTAGTATCAATTTGGGAACTAGCAGTAACCATGACGACTCTGACAAGAAGCCTATTTCTAAAATTCAGAAAGAGCGACAAAATGGTTCTGGGACGAGTATTAAGCAGGATAGGCCATCTCCATTGCCAGCTAAAAGACCACTAGATAATAGCAATTCCTTGCAACCTTCTGTTAAGAAGCCCAAGGTCTCAGCTTCAGATGCATCTATCAAAACTAAGCTAGTCTCTGAGAAACGTGAGCTGAAGACAGAGGATGATGATGATGATGATGATATGCCTATTTCCCAGAGAATAAAGAAACAAACCATAACAGGTGATAAATCATCTTCCACGAAGAAGGTGCTTACAAAGGTTTCTAAAGTTAACAAGTCTAGTTCGAAACCTTTCAAGAAACAGACCAAGAAGATAGTTAAGAAATCAGGCGGTGGTTCAGAATATTCCAAATCTAGCAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCACCTCCTTACCAGCAGCACGGGGTAAAGATGCTCTATAAGGGGAGGCCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACGGAGTACATGCAGAAAGATAAGTTCAAGGATAATTTCTGGAATGACTGGCGAAAGATTCTTGGAAGAAATCACGTAATCCAGAACTTGAAAGACTGTGATTTCACTCCAATATATGACTGGTACCAAGGTGTGAAGGAAAAGAAGAAGCAAATGACCAGCGAAGAGAAGAAGAATTTGAAGGAAGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATGGTAGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAGACGGATTCATCCAGGTGACATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGGGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTAGCCTATTGGAGTGACCCTATAAATCCAAAGTTATTCAAGTATGTGTTTCTGGCTGCAAGTAGTTCTTTGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGAGAACATTAGGTCTGCATACACAAAAGATTTTACCAATAAAGATATTACTAAGCTGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGACGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAACCTCCCAACAAATTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTATATAATGCAATATTGAAGTTACAAAAAGATAAACGTCCTGGTGATGATCTCTTTGATAAGCTGGATACAAGTAAATTAAATGCCCATCTGAAGGAACTCATGCCCGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATAATATGTTAAATCAAGAAACTAAAGATGGAGATGTTGGGGAGAAAATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGCAATCATCAACGTAGTGTTTCAAAATCTCATGATGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCGCCTTCAAAGAGTTCAGATGGAAAGACAAAAAAGAACTTGACTCCTGAAGTGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAGATGCAACGTGATATGAAGACAAAGGAAGATTTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCGAAATTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2679 | 0.3938 | MAVETSDKPNLPHDFDDEDDAPIIYKRFSSKKNQSHSEARKSSTHIHDGQSYRQAANAPSSNGQTSSMQKGNTAPSLKPSAMKPSVGISRAPNSVGNTSSVKLPVANSKSISLADKQKMSIDVKVEPKSTEHSGKGLCEDSEDDEDDKPLSFRLKNSNHNNKVTSVVKKSYEDSDDDDDVPLAKKLPRSINLGTSSNHDDSDKKPISKIQKERQNGSGTSIKQDRPSPLPAKRPLDNSNSLQPSVKKPKVSASDASIKTKLVSEKRELKTEDDDDDDDMPISQRIKKQTITGDKSSSTKKVLTKVSKVNKSSSKPFKKQTKKIVKKSGGGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQQHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWNDWRKILGRNHVIQNLKDCDFTPIYDWYQGVKEKKKQMTSEEKKNLKEEKMKQEEKYMWAMVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRSAYTKDFTNKDITKLQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDNMLNQETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF | 892 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun11g02838 | 892 | SUPERFAMILY | DNA breaking-rejoining enzymes | 563 | 889 | IPR011010 | GO:0003677 | |
| Viun11g02838 | 892 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 838 | 856 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 9 | 47 | - | - | |
| Viun11g02838 | 892 | FunFam | DNA topoisomerase I | 364 | 448 | - | - | |
| Viun11g02838 | 892 | Coils | Coil | 819 | 839 | - | - | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 605 | 624 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 708 | 722 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 650 | 666 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 628 | 642 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 489 | 498 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | PRINTS | Eukaryotic DNA topoisomerase I signature | 845 | 856 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | CDD | Topoisomer_IB_N | 349 | 561 | - | - | |
| Viun11g02838 | 892 | PANTHER | DNA TOPOISOMERASE I | 120 | 892 | - | - | |
| Viun11g02838 | 892 | Gene3D | - | 365 | 448 | IPR013034 | GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 563 | 788 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | Gene3D | Topoisomerase I; Chain A, domain 3 | 563 | 711 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | CDD | Topo_IB_C | 569 | 762 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | Coils | Coil | 761 | 795 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 90 | 115 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 330 | 346 | - | - | |
| Viun11g02838 | 892 | Gene3D | - | 712 | 892 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 166 | 184 | - | - | |
| Viun11g02838 | 892 | FunFam | DNA topoisomerase I | 712 | 892 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 788 | 811 | - | - | |
| Viun11g02838 | 892 | Pfam | C-terminal topoisomerase domain | 824 | 892 | IPR025834 | - | |
| Viun11g02838 | 892 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 349 | 560 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Viun11g02838 | 892 | Coils | Coil | 446 | 466 | - | - | |
| Viun11g02838 | 892 | SMART | topeu | 489 | 865 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 233 | 249 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 119 | 139 | - | - | |
| Viun11g02838 | 892 | Gene3D | DNA Topoisomerase I, domain 2 | 345 | 560 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Viun11g02838 | 892 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 347 | 562 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Viun11g02838 | 892 | FunFam | DNA topoisomerase I | 563 | 711 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 1 | 346 | - | - | |
| Viun11g02838 | 892 | FunFam | DNA topoisomerase I | 438 | 560 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 284 | 313 | - | - | |
| Viun11g02838 | 892 | MobiDBLite | consensus disorder prediction | 48 | 79 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun11g02838 | K03163 | - | gmx:100799837 | 1486.09 |