Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02828 ATGGGAGTTACTGGATTTGAAATTAGTGGAAATTCTGCTTCTGCTTCTGTTTTGCATTTCGGTGCCAATTCGTTATCTTCCTATAAGGTTCCTATTTCTTTGAGACCCTTTTTCGGGAATGCTCTGAACGCGAGGTTTACGGGGAAAGTTCGGGTTTTTCAGACTCGGAAGCCGAATTTCGGTGCAGTTTCTGCTTCACTGAATGGTGGCTCTAATGTTGGGTTGATTAGTGATGCGGTTCTTCCGAAAGACTCAGAATTTAAGCCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGTGAGGGACAAGAAGCGTGCTGGCACTACTAGAAAACAGAAGACGACGGAAAAGGGTGATAACAACACCAAAAAATTTAGCAGTGCAAGAATGAAAATTGAGAGAAAAGATGGGCATGAAGGTGCTGAAGAAGGTTCCTCCAGAAGTAGTGGCAAGGTCAGAAGATCAGGTACTAAAGGATTTAGAAGTGAAAACGATGGGAGAGAAAACGACCTTGATGTAAAGGCAAAGCAGAAAAATGGGTCGTTGAAACGCCAGAGTTATAGTTTAGAACCAAAATCTAAGAGTATTGTTAGGTCTAGTTTTAATGGTAGCCGTGGGAGTGTCATAAAGAGGGAAGTTGTTCATGATTTGTATTCTTCAAAGATTATGGGAGAGAAGGGTGTTGGTAGCAAACAGAGGGATTACAACACACAGGGTAAAATCCCTTATAGAGATAAAATTGTAGTAACACAAAATGTTCAAGACAAAGGGATTGTAAGAAGACACACTGAGAATGGAAGTTTTATAAATAGAAATGGCATGTCTAATGTGAGAATCAATGGAGGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGACAGTTCGGAGGTGGAACGAGCAGCATTTGAGAATCTGGAAGACCCGAACCAGGTTATCAGAAAGTTACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAATCTAGCCAATTCGTTAAATGGTGCAGACATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGAAAACTAGGAAACTGGCAGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCACTAAGATAAGGAATATATATACTGCTGCTCTTTTTGCACTTGGAAAGTCCAGGAGACCTGTTGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTGATTTAGTAGCTTATCGGAGCATTGCTGTGACTCTTGGACAAGCAGGGCATATGAAGGAGCTCTTTGATGTGATTGATATTATGCGATCACCACCAAAGAAAAAGTTTAAAACAGGGGTATTTAAGAGCTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATGCAGTGCTTAACGCTTGTGTTAAGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGCAGCAAGGGCAACAACCTTCTGCCACAACTTACGGCCTAGTCATGGAGGTGATGCTTTCGTGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCGTTCCCAATTCATTGACGTATAGAGTTCTTGTAAATACACTGTGGAAAGAGGGAAAAAGTGATGAGGCTATATTGGCTGTTCAAGAAATGGAAAATCGAGGAATTGTAGGTTCGGCTTCTCTTTATTATGATCTGGCTCGATGCCTCTGTGCAGCTGGAAGAAGTTACGAGGCACTAAAGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACGTACACTGGTTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAACCTGGTTACACATAACATATTGCTGAAAGCTTATTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATTGTCTGAGGGGAAATACTGATTACAAGATGGTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGATCATGTCTATCAAAGGATGTTGTACCAAGGTTATCATTTCAATCCAAAACGTCATCTTCAAATGGTATTGGATGCTTCAAGAGCGGGAAAGGAACGGCCATTGGAGATAACATGGAAACACTTAACCGACATGGATCGAACTCCACCAACTTCTCTGGTGAAGGAGATGTTTTGTTCTAAGCTTGAGAGAGAAGACTACGTTGCTGCTCTCACATGTATGACCAACAATCTCCCAAAAGACTCGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTAAAGAATAATTCTCACCGGTTTCAGAAGGATACGATTGTTGGACTAATGAACGAGGCCAACAAAATGGTTTCCAATAGTAGTTTACCAAATCCAACACTTGAATATTTGATACAATCATGTAAAAAAATTCTTTTTTCCACTGACATGAGTGAAGTTGACATGGATTCGATGAAAAATGCAGTTGAAGTTGAAGTAGAGAATAAGCTGGTCATAGCCAACTCAAGATGA 2688 0.4036 MGVTGFEISGNSASASVLHFGANSLSSYKVPISLRPFFGNALNARFTGKVRVFQTRKPNFGAVSASLNGGSNVGLISDAVLPKDSEFKPSFDEYLKAMESARTVRDKKRAGTTRKQKTTEKGDNNTKKFSSARMKIERKDGHEGAEEGSSRSSGKVRRSGTKGFRSENDGRENDLDVKAKQKNGSLKRQSYSLEPKSKSIVRSSFNGSRGSVIKREVVHDLYSSKIMGEKGVGSKQRDYNTQGKIPYRDKIVVTQNVQDKGIVRRHTENGSFINRNGMSNVRINGGRKRFIDRGYDSDSSEVERAAFENLEDPNQVIRKLQFSHKEMEEKIQNLANSLNGADINLPEWIFSKMIRSARLKFSDYSITRIITILGKLGNWQRVIQVIEWLQKRERFKSTKIRNIYTAALFALGKSRRPVEALNIFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGVFKSWDPRLEPDIVVYHAVLNACVKQKQWEGAFWVLQQLKQQGQQPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFVPNSLTYRVLVNTLWKEGKSDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSYEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTHNILLKAYLEHGMFQEAKALFEQMSENANCLRGNTDYKMVVVPDTYTFNTMLDACVSEQRWDYFDHVYQRMLYQGYHFNPKRHLQMVLDASRAGKERPLEITWKHLTDMDRTPPTSLVKEMFCSKLEREDYVAALTCMTNNLPKDSQPFSKSSWLKLLKNNSHRFQKDTIVGLMNEANKMVSNSSLPNPTLEYLIQSCKKILFSTDMSEVDMDSMKNAVEVEVENKLVIANSR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02828 895 MobiDBLite consensus disorder prediction 101 196 - -
Viun11g02828 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Viun11g02828 895 Pfam Pentatricopeptide repeat domain 483 532 IPR002885 -
Viun11g02828 895 Pfam Pentatricopeptide repeat domain 624 670 IPR002885 -
Viun11g02828 895 SUPERFAMILY TPR-like 471 689 IPR011990 GO:0005515
Viun11g02828 895 Coils Coil 317 344 - -
Viun11g02828 895 PANTHER OS01G0674700 PROTEIN 66 879 IPR044645 GO:0009658
Viun11g02828 895 Gene3D Tetratricopeptide repeat domain 324 474 IPR011990 GO:0005515
Viun11g02828 895 Gene3D Tetratricopeptide repeat domain 475 576 IPR011990 GO:0005515
Viun11g02828 895 NCBIfam pentatricopeptide repeat 661 689 IPR002885 -
Viun11g02828 895 NCBIfam pentatricopeptide repeat 708 734 IPR002885 -
Viun11g02828 895 Pfam PPR repeat 708 737 IPR002885 -
Viun11g02828 895 Pfam PPR repeat 558 587 IPR002885 -
Viun11g02828 895 Pfam PPR repeat 404 429 IPR002885 -
Viun11g02828 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 689 IPR002885 -
Viun11g02828 895 MobiDBLite consensus disorder prediction 160 183 - -
Viun11g02828 895 FunFam Pentatricopeptide repeat-containing protein 329 475 - -
Viun11g02828 895 MobiDBLite consensus disorder prediction 101 153 - -
Viun11g02828 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Viun11g02828 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Viun11g02828 895 Gene3D Tetratricopeptide repeat domain 609 787 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02828 Viun-Chr11 40388812 40395153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02828 485 737 Glycosyltransferase AT1G05670 22.302 4.88e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02828 - - gmx:100787028 1337.4