Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02677 ATGGCTTCAACGACTTTAACAACCCTTACCCTTCGCTCTCTATCTTATCCTACACCCTCCTCTTACCCTACGCACCTCTCCGCCAAACCCTCCATCCAATTCCCCAACATCTTCCACCGCGCTACCACCGCCACGCGCCGGGCACGCGTCGTCGTCTCTGCCGTCGAAGCGCCGGAGAAAATCACAAACCTCGGCGACGCAATCGCCGGACTCACCCTGGAGGAGGCGAAGGTCCTCGTGGACTTCCTCCAGGACAAGCTCGGCGTCTCCGCAGCTTCCTTCGCTCCCGTGGCTGCCGTCGCGGCTCCCGGAGGTGCCGCTGCGGATGCGGCGCCGGCGGTGGAAGAGAAGACGGAGTTCGACGTCGTGATCGAAGATGTGCCGAGCAATGCGAGAATCGCCGTGATTAAGGCCGTGAGAGGGTTGACGAGCCTGGCACTGAAGGAGGCGAAGGAGCTCATCGAAGGGTTGCCGAAGAAGTTCAAGGAAGGGGTTTCAAAGGAAGAAGCTGAAGATGCGAAGAAGCAACTTGAAGAAGCTGGTGCCAAGATTGCCATTGTTTAG 564 0.5904 MASTTLTTLTLRSLSYPTPSSYPTHLSAKPSIQFPNIFHRATTATRRARVVVSAVEAPEKITNLGDAIAGLTLEEAKVLVDFLQDKLGVSAASFAPVAAVAAPGGAAADAAPAVEEKTEFDVVIEDVPSNARIAVIKAVRGLTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKIAIV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02677 187 Hamap 50S ribosomal protein L7/L12 [rplL]. 54 187 IPR000206 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 SUPERFAMILY ClpS-like 115 186 IPR014719 -
Viun11g02677 187 PANTHER 39S RIBOSOMAL PROTEIN L12 38 186 IPR000206 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 FunFam 50S ribosomal protein L7/L12 116 187 - -
Viun11g02677 187 Pfam Ribosomal protein L7/L12 dimerisation domain 60 109 IPR008932 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 CDD Ribosomal_L7_L12 59 186 IPR000206 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 Gene3D Single helix bin 60 115 IPR036235 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 Pfam Ribosomal protein L7/L12 C-terminal domain 120 186 IPR013823 GO:0003735|GO:0006412
Viun11g02677 187 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 60 122 IPR036235 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 NCBIfam 50S ribosomal protein L7/L12 62 186 IPR000206 GO:0003735|GO:0005840|GO:0006412
Viun11g02677 187 Gene3D - 116 186 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02677 Viun-Chr11 39583087 39584160 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02677 K02935 - gmx:100779891 227.254