Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02646 ATGAGAGGTTTTGCCAGAAGCTCGAACTCGTTGGCGAGGAAGTTGTTGTTCCATGGAAGGAACGCTCAATCCCAATGCAGTAGTCGTTCGTACAGTCTCATCCCAATGGTGATTGAGCACTCTTCCCGAGGGGAGAGAGCTTACGACATCTTCTCGCGCCTCCTCAAAGAGCGCATTATCTGCATCAATGGACCCATCTCCGACGACACTGCTCACGTCGTCGTTGCGCAGCTTCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCCACATGTACGTCAACTCCCCCGGTGGTGCCGTCACTGCAGGGCTAGCTATCTATGATACGATGCAGTATATTAGGTCTCCGGTCAATACAGTGTGCATGGGCCAAGCTGCATCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCAGGGGCGAGAGGCGAGCTCTTCCAAATGCAACAATCATGATTCACCAACCTTCTGGTGGTTTTAGTGGCCAGGCAAAGAATATTGCGGTTCATGCCAAGCAGATTGTTAGAGTTTGGGATTCTTTGAATGAGTTGTATGCCAGGCATACGGGCAAGTCGGTTGAGGTCATTCAGGCAAATATGGACGCAGATAACTTCATGACTCCACAAGAGGCCAAAGAGTTTGGGATCATTGACGAGGTCATTGATCAGAGACCTATCACTTTGGTTTCTGATGCTGTTGGTAATGAAGGGAAAGACAAAGGTTCCAATTAG 729 0.4979 MRGFARSSNSLARKLLFHGRNAQSQCSSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIHMYVNSPGGAVTAGLAIYDTMQYIRSPVNTVCMGQAASMGSLLLAAGARGERRALPNATIMIHQPSGGFSGQAKNIAVHAKQIVRVWDSLNELYARHTGKSVEVIQANMDADNFMTPQEAKEFGIIDEVIDQRPITLVSDAVGNEGKDKGSN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02646 242 CDD S14_ClpP_2 49 219 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 ProSitePatterns Endopeptidase Clp histidine active site. 142 155 IPR033135 -
Viun11g02646 242 Gene3D - 20 227 - -
Viun11g02646 242 Pfam Clp protease 43 222 IPR023562 -
Viun11g02646 242 FunFam ATP-dependent Clp protease proteolytic subunit 32 224 - -
Viun11g02646 242 PRINTS Clp protease catalytic subunit P signature 120 137 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 PRINTS Clp protease catalytic subunit P signature 49 64 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 PRINTS Clp protease catalytic subunit P signature 89 109 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 PRINTS Clp protease catalytic subunit P signature 198 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 PRINTS Clp protease catalytic subunit P signature 141 160 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 226 IPR023562 -
Viun11g02646 242 SUPERFAMILY ClpP/crotonase 33 222 IPR029045 -
Viun11g02646 242 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 33 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02646 242 ProSitePatterns Endopeptidase Clp serine active site. 120 131 IPR018215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02646 Viun-Chr11 39305164 39306964 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02646 K01358 - gmx:100782585 398.282