Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02642 ATGGCCACTCTGCAATTCACCTTCACCGACTCAACCTCCTTGTTCAGGCCTTCTCTACATTCTTCGCGAACCTTCCCTCGGAATCGAAGCCTCGTTGTCAAAGCCTCTTCTTCTTCTTCCGACGACATTTCCCGGAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCAATATCGGTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTTTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTGCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGCTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGGTGGATAGTTGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGTGCTGAACTTCCTGGGGATATGGTGTACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTCACTGACGAAGGTGCAATATACGTTACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCGGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCGTTCTGGCAGCCACATAATAGAGCAGTGGCCAGAAGAATACAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACAGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGAGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCCAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGACAAAAAAGGATTTGTATTGGGGAATGACGGAGTCTTGCTTCGCTACCTTGGATAG 1182 0.4966 MATLQFTFTDSTSLFRPSLHSSRTFPRNRSLVVKASSSSSDDISRSRRRFLAETAAISVSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAARSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGQSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02642 393 Coils Coil 392 393 - -
Viun11g02642 393 Gene3D - 130 366 IPR015943 GO:0005515
Viun11g02642 393 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 13 393 - -
Viun11g02642 393 Pfam Photosynthesis system II assembly factor YCF48 71 391 IPR028203 -
Viun11g02642 393 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 74 392 - -
Viun11g02642 393 PIRSF Photosystem_II_Ycf48-like 39 393 IPR016705 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02642 Viun-Chr11 39267799 39272094 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02642 - - gmx:100810566 751.125