Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02620 ATGGCAAAAGAGGGAAGCGACTTTGATGAGGTAAACAACGCCGTGGAGGGCACGGGGGAGGAAGAAGAAGAGGAAGAGCACGCCGCAGCGCAGGAGGAAGATGACAATGACATGGAAGAAGAGGATGAGTATACTTTCAGGTTTGAAAACGGGATGGATCCTTTGGACTTTGTCGACAACAATGACGATTCAGGCCTTCTACCCTACGAACGATTCGAGCGTCTTGAACAGGAAGCTCTCGCTGATAAAAAGCGAAAAGCAACTGAACAATGCCACAGTGAAGAGCCACCTTCTAAGTTGGCTAGGGAATGTGGTATTTCCGGGTCAAAGATAGCTGAGATAATGGAAGCAATGAATTATCATGGCGTGCGCAAGAGATCAAGAAAGCCTAAAAAGAGAGGCAGGCGGAAAGGATCAAGAAATAGAACGGACCCTAAGCTAACACGGATGCTGGGTGATGCCACACTTCACTATGCATGTGGCCATTATGACAAGGCTAAAGCTGTGCTGCTTGAAGTTATTAAGTTGGCACCGAATTTGGCTGATTCTTATCACACTCTTGGACTTGTCTGTAGTTCACTCCAGGATTATAAAAGAGCAATGAGTTTTTACCTAATTGCCGCTCATTTAAATCCTAAAGATGCATCTCTTTGGAAAAGGATTTTTACCTGGTCCATAGAACAAGGTTATATTGATCAGGCACGGCATTGTCTTTTAAAAGCAATTACAGCAGATCCCAAAGATGTTACTCTTAGAGGTCTTCTTGCAAGGCTTTATGTTGAACTTGGAGACTATCAAAAAGCTGCTGTTACATATGAGCAAGTACATCAACTCTGTCATGAGAATGTTGATCCACTGAAAACTGCAGCTAAGTTGTACAAAAAATGTGGTCAAGTTGAGCATGCTGTTTGTATTCTTGAAGACTATCTTAAGAGTCAACCTGATGGAGCAAATTCGAGTGTAGTTGATCTGCTGTGTACCATATTGATGGAAACTAAGGCGCATGACAGAGGTCTGCAGTATATAAAACATGCCCAAGCTGCAAATGCATGGGAAGAGTTACCATTGAATTTGAAAATTAAGGCTGGAATTTGCCATGCTCATCTTGGAAAAATGGATATGGCTCAGGTTCTCTTCAATGATTTGAAACCAGAGAATGCAAGCAAGCATGTTGACTTGGTTATTGAGGTTGCTGATTCATTGATGGGTCTTGAACATTATAACCCTGCATTGAATTATTATTTGATGTTGGAAGGAAATATTGGAAACGAAAATGGTCCTCTATATCTGAAACTTGCTAAATGTTACATGTCCTTGAAAGAAAGTTCACAAGCAATTATTTTTTTTTACAAAGCCCTTGAAATACTACAAGATGACGTTGATGCACGGATAACTCTGGCTTCCCTTCTGCTTGAAGAGGGAAAAGAAGATGAAGCAATTTCCTTGTTGTCTCCTCCAAATGATTCTGACTCTGGTGAAGCTAATCCTGAAAAGTCAAATGGATGGTGGGTTGATATAAGAATAAAACTGAAACTCTGCAACATTTATTGGAATAGAGGGACACTTGGTGATTTTGTGGATACAATTTTCCCTTTGGTTCGTGAATCATTGTATGTTGCAACTCTTCGACAGAAGGGTAAATCAAAAAGGCGACTCACCAAAAGAGATCTGGTCGAAAGGGTTAGGATACTAGATGGTCCAGAAAAAGATAATGTATTTCGAGGATTCAGGCCAGTAGCTGCAGCATCTGATCGGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTGCAGAAGATGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCATCCGGAATTGATTGGCTAAGTGATGATTCAGATGAGGAACCTCAGCAAGAAAACAGAGAACCTCCCTTGTGCAATCTTCTCAAAGATGAAGAACATCACCAGCTAATAATCGATTTATGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCTGGTACATCTCTGTCTACTGACAAGAAAGAGGAACTTCGATCCCTTGGAGCTCAAATGGCATACAGTACCACGGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGACACAAGACATTATAAATTTGTACGTGTTATGCAAGGAAAGTTTGTGGACTGCGTGCCTCCTATTCTAATTTCTGGCCATCAGTTTACCATATTTAGCCATCATCAAGACGCAGCAAGGAAATACCTCGAAGCTTACAAACTATTGCCAGAGAATCCCTTGGTTAATCTCTGCGTTGGAACAGCCTTGATCAACTTGGCATTGGGTTTCAGACTTCAGAACAAGCATCAATGTCTTGTACAAGGTTTAACATTCCTCTACAATAACTTGAGAATCTGCGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCCTATCATCATGTTGGCCTTGTAACTCTGGCGGCTATTTATTATGAGAAAGTGATTGGTATTTGCGAGAAAGACTATCCTATTCCAAAACTTCCCAATGAGAATCCAGATGTCATCGAAAATCATAAACCTGGTTACTGCGACCTTCGCAGAGAGGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGCGCTCTTGATCTAGCTAGGCAAGTTCTCAAAGATCACTGTACCTTATGA 2760 0.413 MAKEGSDFDEVNNAVEGTGEEEEEEEHAAAQEEDDNDMEEEDEYTFRFENGMDPLDFVDNNDDSGLLPYERFERLEQEALADKKRKATEQCHSEEPPSKLARECGISGSKIAEIMEAMNYHGVRKRSRKPKKRGRRKGSRNRTDPKLTRMLGDATLHYACGHYDKAKAVLLEVIKLAPNLADSYHTLGLVCSSLQDYKRAMSFYLIAAHLNPKDASLWKRIFTWSIEQGYIDQARHCLLKAITADPKDVTLRGLLARLYVELGDYQKAAVTYEQVHQLCHENVDPLKTAAKLYKKCGQVEHAVCILEDYLKSQPDGANSSVVDLLCTILMETKAHDRGLQYIKHAQAANAWEELPLNLKIKAGICHAHLGKMDMAQVLFNDLKPENASKHVDLVIEVADSLMGLEHYNPALNYYLMLEGNIGNENGPLYLKLAKCYMSLKESSQAIIFFYKALEILQDDVDARITLASLLLEEGKEDEAISLLSPPNDSDSGEANPEKSNGWWVDIRIKLKLCNIYWNRGTLGDFVDTIFPLVRESLYVATLRQKGKSKRRLTKRDLVERVRILDGPEKDNVFRGFRPVAAASDRLKASRAKKLLQKMAIEKEKRKAEALASGIDWLSDDSDEEPQQENREPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAGTSLSTDKKEELRSLGAQMAYSTTDPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRVMQGKFVDCVPPILISGHQFTIFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCLVQGLTFLYNNLRICENSQESLYNIARAYHHVGLVTLAAIYYEKVIGICEKDYPIPKLPNENPDVIENHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02620 919 Pfam Tetratricopeptide repeat 226 275 - -
Viun11g02620 919 Pfam Tetratricopeptide repeat 154 214 - -
Viun11g02620 919 Gene3D Tetratricopeptide repeat domain 580 918 IPR011990 GO:0005515
Viun11g02620 919 SUPERFAMILY TPR-like 760 914 IPR011990 GO:0005515
Viun11g02620 919 SUPERFAMILY TPR-like 154 329 IPR011990 GO:0005515
Viun11g02620 919 MobiDBLite consensus disorder prediction 80 100 - -
Viun11g02620 919 Gene3D Tetratricopeptide repeat domain 136 355 IPR011990 GO:0005515
Viun11g02620 919 FunFam General transcription factor 3C polypeptide 3 550 918 - -
Viun11g02620 919 Coils Coil 21 42 - -
Viun11g02620 919 SUPERFAMILY TPR-like 272 481 IPR011990 GO:0005515
Viun11g02620 919 MobiDBLite consensus disorder prediction 124 140 - -
Viun11g02620 919 Gene3D Tetratricopeptide repeat domain 360 522 IPR011990 GO:0005515
Viun11g02620 919 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Viun11g02620 919 Pfam Tetratricopeptide repeat 832 863 IPR019734 GO:0005515
Viun11g02620 919 Pfam Tetratricopeptide repeat 427 455 IPR019734 GO:0005515
Viun11g02620 919 MobiDBLite consensus disorder prediction 122 145 - -
Viun11g02620 919 MobiDBLite consensus disorder prediction 14 46 - -
Viun11g02620 919 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 12 919 IPR039340 GO:0006383
Viun11g02620 919 MobiDBLite consensus disorder prediction 1 62 - -
Viun11g02620 919 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Viun11g02620 919 MobiDBLite consensus disorder prediction 80 99 - -
Viun11g02620 919 SMART tpr_5 181 214 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 147 180 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 249 282 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 426 459 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 831 864 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 215 248 IPR019734 GO:0005515
Viun11g02620 919 SMART tpr_5 644 677 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02620 K15201 - gmx:100804533 1562.74