Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02606 ATGGCTTCGCCGGCGTGGTTGCCGCAGGAGGCGAAGCCACCTGTGTCCGGAGAAACGTCTCTTCCTATGGCTTCTCCTACCCCTAATTCCGCTCATGCAACTCCTTCTACCGCTCCGGCACCGGCTTCGGCACCTCCATTTCCTCACGGCGTTCTTCAGAATGCTAATGCTTCGGGAAGCTCGCAGCAGTCATCGACACATAATGTGATAAAATCCAATTCAACAGTAAACCCTGTAGTTTTTCAACCTCCAGTTCCTGGTGTGTCGTCGCATGCTGCTCTTTCGTTTTCATATAATGTCCCCCAGAGTGGTGCTGCTTTTTCTAGCACCCAGCAGCATACTCAATCTAGTGGTAAAATCTCCGAATCTGTTGCACAGGATGTTACTAAATTATCATCTACGTCAAGTAATCCACATTCTGTCCCTGCTCATACTTCTACATCGATAATGCCTCCCTCTGATCCTAATTATCGTCCAACTACTTCGTGGATGCCCACTGCCATGTCTTTTCCTTTGCATCCTGTAATGCCTACTCCAGGAAATCCTGGCCCTCCTGGATTAACATCAACTTCTATAATATCCATCAATCCTGCTGTTCCATCTACAGGAACAGATTCTTCCTCAGCGGCATTACCGAGACCAAACATGCCAATTTCAGCCATTGCATCGGATCCTACTACCCCTCTAAAAGGTTTACCCTATCCATCCATGCCTTCAATGGCTGCTCCCCCTCAGGGACTTTGGTTACAGGCCCCACAGATGAGTGGTGTCTTTAGGCCCCCATATTTACAATACCCTGCTCCTTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGTTACTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGAGTGGTGGCGGTGGCACTTCTACACCTGCTTCCAGCAATCATATAAGGGGAACAACTGCTTTGCAAACAGAAGTTATTTCAGGGCCAGCTGATGATAAAAAGAAATTAAATGCTGTTGTCACCCAGAATGAGGATGCTGCTAATAATGATCAATTAGAGGCCTGGACTGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCCTTGACTGGAGAATCAACATATGATAAACCTGCTGGATTTATGGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGATGGATTTGCCTGGTACTGATTGGCTGTTGGTCTCTACCAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATTCCAAACGAGGTGGCTGAATTGAAGAAGAAACAAGATGGTGATGTTACAAAAGATCAGTTAATGTCAGTTCCAAATACTAATGTCTTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCCAATCTACAGAGCCCATCATCGGCTTTGGATTTGATCAAGAAGAAATTGCAGGATTCAGGAACACCTGTTACTTCCTCTTCTATTCCTGCGCCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAGTTGAATCTACCTCTAAGGGCATGCAAGCAGATAATAGCAAAGATAAACAAAAAGATACTAATGGTGCTGCTAATGTTTCTGATACATCTTCAGATTCTGAAGATGAAGACAGTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGAGATGCTCAAGGAGCGAGGAGTGGCACCATTCTCAAAATGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATTCCAAGTTATTCTGCAAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCTGAAGAAGAACGCAAAGAAAAGCGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAACAATTACTGGATGAAGCCTCAGAGGATATTAACTACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCATTTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGACACAAGCAATGCGTGCAGCTGCTGCAGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATATCTTTCAGCTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGGTTTGTTCAATGAGTATTTATCTGAACTGAAAGCTGCAGAACATGCGGCAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTTAGGGAAAGAGAACGAGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTGGTGGAGACAATCAAAGATCCTCTGGCATCATGGACGGAATCGAAACCTAAATTAGAAAAGGATCCTCAAGGACGCGCAACTAATCCTGAACTTGATTCTTCTGATACGGAAAAGTTGTTTCGGGAACACGTGAAGATGCTTCAGGAGCGATGTGCTCACGAGTTTAGAGTTCTCTTAGCTGAAGTATTGACCTCTGATGCTGCATCTCATGAAAATGACGATGGAAAAACAGTGCTAAATTCTTGGTCCACAGCTAAGCGAGTTCTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGGCGGTATGCAGAAGATATGGTGCGGCGTCAAAAGGCATCTCATTCTCATGATTCCAGGGAAGATAAACATACTGATGCTAAAGGTAGAAATTCTCTAGAATCTTCCAAATATCCATTGGAATCTGGGAGATCGCACGACCGAAGATAA 2934 0.4414 MASPAWLPQEAKPPVSGETSLPMASPTPNSAHATPSTAPAPASAPPFPHGVLQNANASGSSQQSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGAAFSSTQQHTQSSGKISESVAQDVTKLSSTSSNPHSVPAHTSTSIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNPGPPGLTSTSIISINPAVPSTGTDSSSAALPRPNMPISAIASDPTTPLKGLPYPSMPSMAAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVSGGGGTSTPASSNHIRGTTALQTEVISGPADDKKKLNAVVTQNEDAANNDQLEAWTAHKTEAGIIYYYNALTGESTYDKPAGFMGEPHQVSAQPTPVSMMDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPAPSVQTGSESNGSKAVESTSKGMQADNSKDKQKDTNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINYNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKERGDISFSSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMVRRQKASHSHDSREDKHTDAKGRNSLESSKYPLESGRSHDRR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02606 977 MobiDBLite consensus disorder prediction 1 69 - -
Viun11g02606 977 SUPERFAMILY FF domain 803 872 IPR036517 -
Viun11g02606 977 SUPERFAMILY FF domain 869 940 IPR036517 -
Viun11g02606 977 MobiDBLite consensus disorder prediction 53 69 - -
Viun11g02606 977 FunFam Pre-mRNA-processing protein 40C isoform C 635 698 - -
Viun11g02606 977 CDD WW 353 378 IPR001202 GO:0005515
Viun11g02606 977 SUPERFAMILY WW domain 352 383 IPR036020 GO:0005515
Viun11g02606 977 ProSiteProfiles FF domain profile. 707 761 IPR002713 -
Viun11g02606 977 Pfam WW domain 351 378 IPR001202 GO:0005515
Viun11g02606 977 MobiDBLite consensus disorder prediction 505 572 - -
Viun11g02606 977 SMART FF_2 572 626 IPR002713 -
Viun11g02606 977 SMART FF_2 810 867 IPR002713 -
Viun11g02606 977 SMART FF_2 869 934 IPR002713 -
Viun11g02606 977 SMART FF_2 707 761 IPR002713 -
Viun11g02606 977 SMART FF_2 639 694 IPR002713 -
Viun11g02606 977 ProSitePatterns WW/rsp5/WWP domain signature. 353 378 IPR001202 GO:0005515
Viun11g02606 977 Gene3D FF domain 868 934 IPR036517 -
Viun11g02606 977 Gene3D FF domain 807 867 IPR036517 -
Viun11g02606 977 Pfam FF domain 813 864 IPR002713 -
Viun11g02606 977 Pfam FF domain 578 623 IPR002713 -
Viun11g02606 977 Pfam FF domain 642 689 IPR002713 -
Viun11g02606 977 Pfam FF domain 876 931 IPR002713 -
Viun11g02606 977 Pfam FF domain 710 758 IPR002713 -
Viun11g02606 977 MobiDBLite consensus disorder prediction 107 155 - -
Viun11g02606 977 MobiDBLite consensus disorder prediction 20 37 - -
Viun11g02606 977 Gene3D - 390 448 - -
Viun11g02606 977 Gene3D - 331 389 - -
Viun11g02606 977 Gene3D FF domain 557 629 IPR036517 -
Viun11g02606 977 MobiDBLite consensus disorder prediction 505 538 - -
Viun11g02606 977 SUPERFAMILY WW domain 404 436 IPR036020 GO:0005515
Viun11g02606 977 FunFam Pre-mRNA-processing protein 40C 807 867 - -
Viun11g02606 977 Gene3D FF domain 699 774 IPR036517 -
Viun11g02606 977 MobiDBLite consensus disorder prediction 911 959 - -
Viun11g02606 977 ProSiteProfiles FF domain profile. 639 694 IPR002713 -
Viun11g02606 977 ProSiteProfiles WW/rsp5/WWP domain profile. 353 380 IPR001202 GO:0005515
Viun11g02606 977 FunFam pre-mRNA-processing protein 40C isoform X1 557 634 - -
Viun11g02606 977 MobiDBLite consensus disorder prediction 834 856 - -
Viun11g02606 977 FunFam Pre-mRNA-processing protein 40C 869 934 - -
Viun11g02606 977 ProSiteProfiles FF domain profile. 572 626 IPR002713 -
Viun11g02606 977 SUPERFAMILY FF domain 567 632 IPR036517 -
Viun11g02606 977 SUPERFAMILY FF domain 631 700 IPR036517 -
Viun11g02606 977 SUPERFAMILY FF domain 701 765 IPR036517 -
Viun11g02606 977 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 58 969 IPR045148 GO:0003712|GO:0070063
Viun11g02606 977 SMART ww_5 400 432 IPR001202 GO:0005515
Viun11g02606 977 SMART ww_5 348 380 IPR001202 GO:0005515
Viun11g02606 977 MobiDBLite consensus disorder prediction 910 977 - -
Viun11g02606 977 ProSitePatterns WW/rsp5/WWP domain signature. 405 430 IPR001202 GO:0005515
Viun11g02606 977 ProSiteProfiles FF domain profile. 810 867 IPR002713 -
Viun11g02606 977 ProSiteProfiles WW/rsp5/WWP domain profile. 405 432 IPR001202 GO:0005515
Viun11g02606 977 Gene3D FF domain 630 698 IPR036517 -
Viun11g02606 977 FunFam Pre-mRNA-processing protein 40C 699 773 - -
Viun11g02606 977 MobiDBLite consensus disorder prediction 766 799 - -
Viun11g02606 977 CDD WW 403 432 IPR001202 GO:0005515
Viun11g02606 977 Coils Coil 759 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02606 Viun-Chr11 39083742 39095634 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02606 K12824 - gmx:100815386 1527.3