Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02578 ATGGATTATGAGGCTGATGGTTTTGGTGCCAATGGCGAGGGAGAGAGCAAGAGAGTGGGTGAAGGCGTTTCTGAGGAGATTGTGGTGGGGTCCGATAGTTTGAAGAGTTTAGATGTAGAGGAGGATTTTCAGGAGGCAATGGAGCCGCGGGAGCAGGTTCATGATCAAGGATCCGAACTCCATCCGGAGGAGGCTGTAGTTGATAAACAGGATGATGCCAACGTTGGTAGTTCATTGGCTTCAGCTTTGGTGGATGAAAAAAGTCCAGATGTCGTTCAGGAGCCTGATTCCTCTAAGGAGGCCGTTGGGGATGATTCTGAGTCTGGGAAGCTGGGTGGAACTGATGTAATTGCTAATCAGGATTTGGAAAGGGATGGGCCGGGAACTGATAGTGTTCATCCGGATGTTGTTGATTCTGGAGTGTCTAGAGATGAAGATTTTTTTTATGGTTCTAATGGTGTGGGGGATGATAATTTGGAGCGTAATGATGGGATTGGTGGAAAGGAAGAGTCTGGGTTAAATTCTGACGTAGAGGTGTCAGATAAGGAAAATGGTGTTGTGGTGGATGAAAACTCTGGTTTGACGAGTGATAAGGCTGAATTTGATGATTCTGATTTCATGACTCCTAGAGAAAATGGTGGTATAACATTGGAGGATATAAGCATTGACAAGGAGGACGGTTTGGATACTGAAGTTATTACCAAATCTGAATCCGATGCGGTGATTCCAGCTGAAGGTACTGATGATGGGGATTTGAAGGACGCAGATCCTGAACTGGGAGATGGCAATACAGAGGTAAAGTTAAATGGTTCAGCGGATTCTTCTGGTGAGATTCAAGATGATACATGTGAAGAAGTACATGCCACTTCAGCTCACACGACTTCAGCACAACAGGATGAAGTTACTAGGGATGTGAAGGATGCTACTCTGGGCACTGATATGAGCCATGAGGATAGAAATGGCGAAGAAACCAGTGCCCCTAGCATTCAGAATGCTGAATTAACTGGTTATGGAAATGGTGATGCCGAAGATGAAAGCTCATCCTCTTTGGAAAATCCCTCAACTAAGGAGACATTGCCTATACAGGAGGGTAGTGCAGCTGATCCGAACGAAGGAAGTAATAAGCATGATCCCTCAACTAAGGAGACATTGCCTATACAGGGGGGTAGTGCAGCTGATCCGAACGAAGGAAGTAATAAGCATGATCCCTCAACTAAGGAGACATTGCCTATTCAGGGGGGTAGTGCAACTGATCCAAAAGAAGGAACTTATAAAGATGATCAAGCTCAGATTTCAGATGAAAATCATAGAGATGATGAGAACTCTTATGTTGTTGAAGAACCTGAAAGGATACAGGAGAAGATTATTAAAGAGACAGGAACCACAGAGGAGACTGGAGAGCAACCTGATCAACCTTCCGCAGATATTTCTTCGGCTGATCCTGGGCCTCCTCCTCTTCGTCCTTCACCTGAAAATTCTGCTGGTGCTGGGCCCACTCCTGTCCGTCCAGCCGGCCTTGGTCGTGCAGCTCCATTGCTGGAACCTGCATCTCGGGTGGTGCAGCAGCCTCGTGCTAATGGTACTGTGTCTAACGCTCAAGCCCAGCAAATGGAGGATTCCTCGAGTGGGGAGGCTGAGGAGTATGACGAGACACGTGAGAAACTTCAGATGATCAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGGCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGACTCGCTGAGCAACTAAGAGGAAGGAATGGGGGCCGCGTTGGTGCTTTTAGCTTTGACCGTGCAAGTGCAATGGCTGAGCAGCTTGAAGCTGCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTCCTTGGAAAGACTGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGACGAGGTTAAGTTTAATACCAGTGCTTTTAGTATGGGAACCAAGAAGGTTCAGGATGTCGTGGGAACAGTACAGGGTATTAAGGTACGGGTCATTGATACACCAGGACTTCTACCTTCCTGGTCAGACCAGCGAAGCAACGAGAAGATCCTCCTCTCTGTTAAGAACTTCATTAAGAAAACTCCTCCTGATATTGTGTTGTATCTTGATAGGTTAGATATGCAAAGCAGGGATTTTAGTGACATGCCACTCTTACGCACAATTACGGAAATTTTTGGGCCATCCATTTGGTTCAATGCCATTGTGGTTCTGACTCATGCAGCATCTGCCCCTCCTGAAGGCCCCAATGGCACTGCTTCCAGTTATGACATGTTTGTTACTCAGCGTTCTCATGTTGTGCAGCAAGCCATTCGCCAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCCTTGGTAGAGAACCATTCTGCTTGCCGAACAAACAGGGCTGGCCAGAGAGTATTGCCAAATGGCCAGGTTTGGAAGCCTCATTTGTTACTTCTATCTTTTGCCTCTAAAATTCTGGCCGAAGCAAATGCTCTTCTTAAGTTACAAGATAGTCCACCTGGGAAGCCTTATATAGCTCGATCACGAGCGCCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCACGACCACAGTTAAAGTTGCCAGAGGAGCAGTTTGGTGATGAGGACAGTCTTGATGATGACCTTGATGAGGCATCAGAGTCTGATGATGAGAATGAACATGATGACCTGCCGCCGTTTAAACCTTTAACAAAGGCCCAGGTGGAAAAGCTGTCTAAAGCTCATAGAAACGCATATTTTGATGAGTTAGAGTACAGGGAGAAGCTTTTAATGAAGAAACAATTGAAGGAAGAAAAAAAGCGACGGAAATTGATGAAGAAAATGGCAGAAGCAGCAAAAGATCTACCTAGTGATTACAGTGAAAATGCGGAGGAAGAAGGTGGTGGTGCAGCTTCTGTTCCTGTTCCGATGCCAGATTTGGCCCTTCCTGCATCTTTTGATTCTGATAACCCCACTCACAGATATCGTTATCTCGATTCGTCAAACCAGTGGCTTGTTAGACCTGTTCTAGAAACTCATGGATGGGATCATGATGTGGGTTATGAAGGCCTGAATGTAGAAAGATTGTTCGTTGTCAAGGACAGGATACCTTTGTCTTTCACGGGTCAGGTTACTAAAGATAAAAAGGATGCTAATGTTCAGATGGAAGTAGCCGGCTCAGTTAAGCACGGGGAAGGGAAAGCAACTTCATTAGGTTTTGACATGCAGACCGTGGGCAAGGACTTGGCTTATACATTACGCAGTGAGACAAGATTTACTAATTTTAGAAGAAATAAGGCAACCGCTGGTCTCTCATTTACTTTGCTTGGTGATGCCTTATCAGGCGGAGTTAAGATTGAAGACAAATTGGTTGCCAGTAAGCGGTTCAAGGTGGTTATCAGTGGTGGTGCAATGGCAGGGCGCAACGACATTGCTTATGGTGGCAGTTTGGAGGCCCAGTTGAGAGATAAAGATTATCCTTTGGGTCGTTTCTTATCTACTCTCGGGCTCTCTGTTATGGATTGGCATGGAGATCTTGCTGTTGGGTGCAATGTGCAATCTCAAATCCCAGTTGGACGACATACGAACCTAGTTGCCCGGGCAAATTTGAACAATCGAGGGGCAGGACAAATAAGTATTCGATTAAACAGTTCAGAACAGCTTCAAATTGCTTTGGTTGCTCTCATCCCTCTCGTAAAGAAGCTAGTTGGTTATCCTCAACAATTGCAGTATGGACAGTATTAA 3777 0.4546 MDYEADGFGANGEGESKRVGEGVSEEIVVGSDSLKSLDVEEDFQEAMEPREQVHDQGSELHPEEAVVDKQDDANVGSSLASALVDEKSPDVVQEPDSSKEAVGDDSESGKLGGTDVIANQDLERDGPGTDSVHPDVVDSGVSRDEDFFYGSNGVGDDNLERNDGIGGKEESGLNSDVEVSDKENGVVVDENSGLTSDKAEFDDSDFMTPRENGGITLEDISIDKEDGLDTEVITKSESDAVIPAEGTDDGDLKDADPELGDGNTEVKLNGSADSSGEIQDDTCEEVHATSAHTTSAQQDEVTRDVKDATLGTDMSHEDRNGEETSAPSIQNAELTGYGNGDAEDESSSSLENPSTKETLPIQEGSAADPNEGSNKHDPSTKETLPIQGGSAADPNEGSNKHDPSTKETLPIQGGSATDPKEGTYKDDQAQISDENHRDDENSYVVEEPERIQEKIIKETGTTEETGEQPDQPSADISSADPGPPPLRPSPENSAGAGPTPVRPAGLGRAAPLLEPASRVVQQPRANGTVSNAQAQQMEDSSSGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFSMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRSNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPYIARSRAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDEASESDDENEHDDLPPFKPLTKAQVEKLSKAHRNAYFDELEYREKLLMKKQLKEEKKRRKLMKKMAEAAKDLPSDYSENAEEEGGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVVKDRIPLSFTGQVTKDKKDANVQMEVAGSVKHGEGKATSLGFDMQTVGKDLAYTLRSETRFTNFRRNKATAGLSFTLLGDALSGGVKIEDKLVASKRFKVVISGGAMAGRNDIAYGGSLEAQLRDKDYPLGRFLSTLGLSVMDWHGDLAVGCNVQSQIPVGRHTNLVARANLNNRGAGQISIRLNSSEQLQIALVALIPLVKKLVGYPQQLQYGQY 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02578 1258 MobiDBLite consensus disorder prediction 884 904 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 966 987 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 35 70 - -
Viun11g02578 1258 Gene3D - 595 843 IPR027417 -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 880 913 - -
Viun11g02578 1258 ProSiteProfiles AIG1-type G domain profile. 623 852 IPR006703 GO:0005525
Viun11g02578 1258 MobiDBLite consensus disorder prediction 233 550 - -
Viun11g02578 1258 Pfam Translocase of chloroplast 159/132, membrane anchor domain 984 1247 IPR024283 -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 89 106 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 299 323 - -
Viun11g02578 1258 Coils Coil 946 966 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 420 464 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 324 412 - -
Viun11g02578 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 760 IPR027417 -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 126 142 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 521 541 - -
Viun11g02578 1258 Pfam AIG1 family 626 759 IPR006703 GO:0005525
Viun11g02578 1258 NCBIfam chloroplast protein import component Toc86/159, G and M domains 502 1258 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Viun11g02578 1258 FunFam Translocase of chloroplast 120, chloroplastic 598 845 - -
Viun11g02578 1258 CDD Toc34_like 598 843 - -
Viun11g02578 1258 MobiDBLite consensus disorder prediction 1 217 - -
Viun11g02578 1258 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 625 1173 IPR045058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02578 Viun-Chr11 38923208 38927901 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02578 - - gmx:100776898 1861.66