Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02571 ATGGATCTCACACCACTGTCGTGTCTCACTCTCATTGTTCTTCTGTTCTTCACTCCCCCAGAGGTTCTGGGTGCCACGTTCACATTCGTTAACCGATGCGATTACACGGTGTGGCCTGGCATTCTCGCAAATGCCGGTAGCCCACCACTCAAGAGCACCGGCTTCGAGCTTCCCAAGGACACTTCTCGCACCTTCCAAGCTTCCACCGGCTGGTCCGGTCGTTTCTGGGCCCGAACCGGTTGCACCTTCGACGGATCCGGATCCGGTTCCTGCCTCACGGGCGACTGCGGCTCCGGCCAAGTCGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCCACTCTCGCCGAGTTCACGCTGGGCACCGGAGGCCAAGACTTCTACGACGTCAGCCTCGTCGACGGCTACAACCTTCCCATGATCGTGGAGGGCACTGGCGGGTCGGGTCTATGCGCCACTACGGGCTGCACGTCGGATCTGAACCAGCAATGCCCCGCGGAGCTGAGAGCCTCCGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCCGAGTACTGCTGCAGCGGCGCGTATGGCTCACCCGCCACCTGTCGGCCCTCCATTTACTCGGAGATGTTCAAGGCTGCTTGCCCCAGATCGTATAGCTACGCATACGATGACGCTACCAGTACGTTTACGTGTACCGGCGCTGATTACACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCTTCACGAGATACCACCACCAACCCCATGCCTTCAACATCATCATCATCACAAGGGTCAGGGACAGTGACAGGAACAGAAGCAGGAACAGGAACAGGAACGGGAATGGGATCCGAAGGAGGAGCAGTGGTGTACAGTGGTGCAGACAACGGAGTTGTGTATAACTCCGTTACAGATTCCGGGTCAAGTACAGGATCCGGAGGAGAAACAATGCTGGCAGATGGGTCATATTTAGCAGGATTGGCCATGGGAGAGGCCTCACCCAGAAGAACAGTTTCCATGGCGTTTGTGTCCTCAGCTAGCTTTTTGCTTATTTTCACCTTCTTGCTTTAG 1071 0.5733 MDLTPLSCLTLIVLLFFTPPEVLGATFTFVNRCDYTVWPGILANAGSPPLKSTGFELPKDTSRTFQASTGWSGRFWARTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCATTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTTTNPMPSTSSSSQGSGTVTGTEAGTGTGTGMGSEGGAVVYSGADNGVVYNSVTDSGSSTGSGGETMLADGSYLAGLAMGEASPRRTVSMAFVSSASFLLIFTFLL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02571 356 MobiDBLite consensus disorder prediction 240 282 - -
Viun11g02571 356 CDD TLP-PA 26 239 - -
Viun11g02571 356 Pfam Thaumatin family 31 240 IPR001938 -
Viun11g02571 356 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Viun11g02571 356 Gene3D Thaumatin 25 240 IPR037176 -
Viun11g02571 356 FunFam THAUMATIN-LIKE PROTEIN 1 25 240 - -
Viun11g02571 356 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Viun11g02571 356 SMART tha2 27 240 IPR001938 -
Viun11g02571 356 MobiDBLite consensus disorder prediction 240 279 - -
Viun11g02571 356 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Viun11g02571 356 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Viun11g02571 356 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Viun11g02571 356 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Viun11g02571 356 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Viun11g02571 356 PANTHER OS03G0233200 PROTEIN 11 240 IPR001938 -
Viun11g02571 356 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02571 Viun-Chr11 38869841 38872323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02571 6 254 Receptor kinase-like Gene Family AT5G38280 47.490 1.79e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02571 - - gmx:100801173 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02571 11 38869841 38872323 Viun11g02571 11 38869841 38872323 ECH