Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02558 ATGGAAACACGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACTACCCGTTCCAGCAAGCGCGCGCGTCTCTCTTCTTCTTCCTCTGCTTCCGCCGCCGCCACCGCCACCGCATCTCTTTCTTCTGTCAACACTCGCTCCCGTGCATCCAGAACTAAAGAACAACCCTTACCTCCCAAGAATCCTCCTCCCAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCATCTGGTTCCCGACGTGATCGCCGCAGCAAGGACAACTCTGATAAGGGTAAGGAGAAAGAACACGATGTTAGGATTAGGGACAGAGATGCGGACAGAGGGCTGGCATTGAACATGGATGGCGGTGCAGAAGACGATGATAATGACAGTGAAGGTGGTGTGGGGATTTTGCATCAAAATTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTGCTTCGGAAGCTTGGTGCTGGGTTGGATGATCTGCTCCCATCTTCTGCCATGGGTTCTGCATCTTCCTCTCACCAGAACGGGAGGCTGAAAAAGATCCTTTTTGGGTTGCGAGCGGAGGGCGAAGAAGGGCGTCAGGTTGAAGCGTTGACGCAACTCTGTGAAATGCTTTCAATTGGGACTGAAGAATCGCTTAGTACATTCTCAGTTGATTCCTTTGTTCCTGTGCTTGTGGGTTTGTTGAATCACGAGAACAATCCCGATATCATGCTTCTTGCTGCAAGAGCATTAACCCATCTCTGCGACGTGCTACCTTCATCTTGTGCTGCGGTTGTTCATTATGGTGCAGTTTCAATTTTCTGTGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAAAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCTGTGCTTTCTTATTTGGACTTCTTTTCTACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAACTTCCTTCAGATGCGTCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCATTACCATGATGCCAAGGTTTTAGAGCACGCTTCTGTTTGTTTGACTCGAATAGCTGAAGCGTTTGCGTCATCACCTGACAAATTAGATGAATTGTGCAACCATGGACTCGTAACACAAGCTGCGTCCCTCATCTCTAACAGTAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCGCCTCTTGGAGCTAAAACTTTACTACTACTCGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCCCCGGAGCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTTCCCCCATTGCCACAAGGAACAATTTCTCTCCCTATCATGGCCAACATGTTTATGAAAGGGCCCATTGTAAGGAAGTCTCCCGCTGGTAGCTCTGGGAAACAAGAAGATTCAAATGGAAATGTTCCTGAGATATCAGCCCGTGAGAAACTATTAAATGACCAGCCTGAACTACTTAAGCAATTTGCTATGGATCTTCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACCAATATATCAAGTTTCTTAGCTGGGGTCCTAGCATGGAAAGATCCACATGTGTTGGTTCCTGCCTTGAAAATTGCTGATATTCTTATGGAAAAGCTTCCTGAGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGATCAACTTATTTTACCCGCAAATTCAACCAATATCTCTACTCAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGAAGCTCCAATCCTGATGGGAATCCTTTGGACGATTTGAAGGCTCCTGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGTGGATATTCCAACAATAAGTATTCGTACGTCTGTTAGTGCAGCTGCAAAGGTTTTTAAAGATAAGTACTTTCCTTCAGATGCTGGGGCATCTGAAGTGGGTATTACCGATGATCTTTTGAATCTGAAAAACCTTTGCATGAAGCTAAATACTGGAGCGGATGAAGAAAGGACCAATGGAAAGGGGAAATCTAAATCTTCTGGATTTGTTCTGGAAGAGTATTTAATTGGGGTCATAGCTGACATGCTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACATTTGAATTTATTGGCAGTGGTGTTGTTGCAGCTTTGTTGAACTATTTTTCCTGTGGGTACTTCTCTAAAGATAAATCCTTAGAAACCCGCTTACCCAACCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCCTCAACTGAGGTTGACACTGTGCCTCCCATGACTGTCTTGGTTCAAAAGCTTCAAAATGCCTTGTCCTCATTGGAACGTTTCCCTGTTGTGCTGAGTCATTCATCCAGGTCATCTAGTGGAAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCATCCCTTCAAGTTGCGGCTTTGTCGAGCTCAGGGTGAAAAGTCACTTAAGGATTATTCATCAAATGTTGTATTGGTTGACCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGTCTCGTATCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGTCATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTATCCACTCCTTCCACTACCCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGACACATCTAGAAAGCAAATACTTCAAGATAAAAGCACTAGCTCTTCTAAGAGTAAGGGAAAAGCTGTATTAAAGCCTGCGCAAGAGGAGCCAAGAGGACCTCAGACCAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAGCAAAGCCTGTAAATGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGGTCATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGATGTTCTGAGGGATGATTCTCTTCCTTTGGTGTGCTCTCCTGACAAAGTACATGATGTGAAATTGGGTGATTTGGCTGAGGAGAGTACTGTTGCTCCTGCAGCAAGTGATGGCCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACCGTGAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACTTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAACAGAGGTATCAGGGGTGGAAGAGATCGACTGGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCATGATGAAGATGAGGACGAGAGATTTGCTGGCAGTAATGATTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGTCAGAGAACCAAACAGATAGGGCTACCCCTGGAGGTTCAAGCTCTAATGCTTCAAAATCTGGCAAATCTGGGTCTGCATCGAATTCTGGTTCTGAAGCCAAGCTACATCAGACATCTGTATTAGATAGCATCTTGCAGGGTGAATTGCCCTGTGAATTGGAGAAATCCAATCCTACATACAATATATTGGCATTATTGCGGGTGCTAGAGGGTTTGAACCAACTTGCCCCTCGATTGAGGGCCCAAGTGGTTACCGATGAGTTTGCAGAGGGAAAGATTTTGGATTTAGATGAGCTAAGTGTTACCAGTGGTGCTAGGGTTCCTGCAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCTCTTGCCTTATGTAGTGGGAGTCTTCCTTCATGGTGTTACCAGCTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACCCGGAGACAGTACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCACTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGATCAGGGTTGGCAGATTGCAGCGGCAAAAGGTTCGTGTATCTCGTAATCGCATTTTGGATTCTGCTGCAAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGCGAAGTTGGCACTGGTCTGGGTCCCACCTTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAGAGTTGCACTCCGAATGTGGAGATCAGGTTCTTCAGAGAAATATTCAATGGAAATTGATGGGAATGAAAGGAAAATGAAAAGTACAGATGGCTCTTTAGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCATGGCCTGCAAATGCTGATACATCTGAGGGTACCCCATTTTTTAGAGTTATTGAATATTTCCGGCTATTAGGTCGTGTAATGGCTAAAGCTCTCCAAGATGGACGCCTATTGGATTTACCACTGTCAGTGGCATTTTATAAGCTCGTTCTTGGTCAAGATCTTGATTTGCATGACATTCTTTTCATTGATGCCGAGCTTGGGAAAACTTTACAAGAGTTGAATGCCCTTGTTTGCCGGAAACGATATATTGAATCTTTTGGTGGTTGCGATACTGATAAAATTGGTAACTTACATTTTCGTGGGGCTCAAATTGAAGATCTTTGCTTTGACTTTACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTAGAGATGAAATTGTTGATATCAATAATCTAGAGGAGTACATATCCATGGTGGTCGAGGCAACTGTTAAGACTGGAATCATTCGTCAGATGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGAAATCTCTTCGTTGCAAATTTTTACTCCCCAAGAACTGGATTACTTGCTCTGCGGCCGTAGAGAATTGTGGAAGACTGAGACACTTGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCAGCTATAGTTAATTTACTAGAAATCATGGGAGAATTCTCACCAGAACAGCAACGAGCCTTCTGTCAATTTGTTACTGGTGCACCTAAACTTCCACCTGGTGGGCTGGCAGTTCTAAATCCAAAACTAACAATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAATCAGCGGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAACTTCCTCCCTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAACGAAGGCCAGGGATCCTTTGATTTATCATGA 5652 0.4452 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAATATASLSSVNTRSRASRTKEQPLPPKNPPPKNPPPMDSANESSGSRRDRRSKDNSDKGKEKEHDVRIRDRDADRGLALNMDGGAEDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQNGRLKKILFGLRAEGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHENNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLHYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIMANMFMKGPIVRKSPAGSSGKQEDSNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIADILMEKLPETFSKMFIREGVVHAVDQLILPANSTNISTQASSAEKDNDSISGASSRSRRYRRRSGSSNPDGNPLDDLKAPVSVNVGSPPSSVDIPTISIRTSVSAAAKVFKDKYFPSDAGASEVGITDDLLNLKNLCMKLNTGADEERTNGKGKSKSSGFVLEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDKSLETRLPNLRQQALTRFKLFIAVALPSSTEVDTVPPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSHPFKLRLCRAQGEKSLKDYSSNVVLVDPLASLAAIEEFLWSRIQRSESGQKSTVPAGHSESGTTPAGAGVSTPSTTRRHSTRSRSSVNIGDTSRKQILQDKSTSSSKSKGKAVLKPAQEEPRGPQTRNATRRRAALDKDAQAKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPLVCSPDKVHDVKLGDLAEESTVAPAASDGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANNRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVHDEDEDERFAGSNDYVSSDGSRLWGDIYTITYQRSENQTDRATPGGSSSNASKSGKSGSASNSGSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQVVTDEFAEGKILDLDELSVTSGARVPAEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREIRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQRVALRMWRSGSSEKYSMEIDGNERKMKSTDGSLAGDGELVQAPLGLFPRPWPANADTSEGTPFFRVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILFIDAELGKTLQELNALVCRKRYIESFGGCDTDKIGNLHFRGAQIEDLCFDFTLPGYPEYILKPRDEIVDINNLEEYISMVVEATVKTGIIRQMEAFRAGFNQVFEISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFSPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1 138 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 65 79 - -
Viun11g02558 1883 FunFam HECT ubiquitin protein ligase family protein KAK 177 491 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 956 1021 - -
Viun11g02558 1883 CDD HECTc 1462 1878 IPR000569 GO:0004842
Viun11g02558 1883 FunFam E3 ubiquitin-protein ligase UPL3 1403 1644 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 659 703 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1264 1296 - -
Viun11g02558 1883 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 254 IPR000225 GO:0005515
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1126 1157 - -
Viun11g02558 1883 SUPERFAMILY ARM repeat 184 652 IPR016024 -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 85 119 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1035 1049 - -
Viun11g02558 1883 SUPERFAMILY Hect, E3 ligase catalytic domain 1455 1876 IPR035983 GO:0004842
Viun11g02558 1883 SMART arm_5 215 256 IPR000225 GO:0005515
Viun11g02558 1883 SMART arm_5 298 338 IPR000225 GO:0005515
Viun11g02558 1883 SMART arm_5 341 379 IPR000225 GO:0005515
Viun11g02558 1883 MobiDBLite consensus disorder prediction 956 1107 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 659 675 - -
Viun11g02558 1883 Pfam HECT-domain (ubiquitin-transferase) 1510 1883 IPR000569 GO:0004842
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1061 1095 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 10 63 - -
Viun11g02558 1883 ProSiteProfiles HECT domain profile. 1583 1883 IPR000569 GO:0004842
Viun11g02558 1883 SMART hect_3 1473 1883 IPR000569 GO:0004842
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1179 1199 - -
Viun11g02558 1883 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1752 1882 - -
Viun11g02558 1883 MobiDBLite consensus disorder prediction 1123 1157 - -
Viun11g02558 1883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1883 IPR045322 GO:0006511|GO:0061630
Viun11g02558 1883 Gene3D Hect, E3 ligase catalytic domains 1402 1645 - -
Viun11g02558 1883 Gene3D - 193 664 IPR011989 -
Viun11g02558 1883 Gene3D Hect, E3 ligase catalytic domain 1755 1881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02558 Viun-Chr11 38765758 38777080 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02558 K10590 - gmx:100783336 3127.81