Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02556 ATGTCAACAATGAAACTTGCTTTGATTACCTTGCTTTTCATCGCTGTTTCACCGACCTTTGCGTCCGGTGCTGAAGAAGAGAAGAAAGACCCAAAAGGCGTCGATAGGGGACCCAAGGAAATCACATACGATAGCAGGTCGCTCATCATCAATGGAAAACGAGAGCTTCTCTTCTCCGGTTCCGTCCATTACCCTCGAAGCCCCCCTGAGATGTGGCCACACATTATTGACAAGGCAAGACGTGGAGGTATAAACGTGATTCAGACATACATCTTCTGGAACATTCACGAGCCTGTGAAAGGCAAGTTCAAAGTGGATCCCGAGTATGATTTCGTGAAGTTCATTCAGCTATGTCAAGACAAAGGAATGTATGTTACCCTCAGGATTGGACCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCGTATTGGCTAAGAGAGGTTCCTGGTATCATTTTCCGTTCAAACAATGATGGCTTTAAGACATTAATGCAAAACTATGTAAATACTGTCATCAAAATGTGTACAGACGCGAAGCTCTTCGGTCCCCAAGGAGGTCCCATCATCTTGGCACAGATCGAGAATGAGTACAACCATATCCAACGTGCTTATAAAGAGGACGGAGATAAGTACGTCCAATGGGCTGCAAACTTGGCAGTTTCAACAAATGTTGGAGTTCCATGGATCATGTGCAAGCAAACTGATGCTCCTGATCCAGTGATTAATGCATGCAACGGAAGGCACTGTGGTGATACCTTTACAGGCCCCAACAAACCCTACAAGCCTTTCCTGTGGACTGAAAACTGGACTGCTCAGTATAGGGTGTTTGGAGATCCACCATCACAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGTTTCTTCTCTAAGAATGGGTCTTTGGTGAACTACTATATGTACTATGGTGGAACAAATTTTGGAAGAACAAGCTCTGGCTTCAGTACAACCCGATATTACGATGAAGCCCCTCTTGACGAGTTCGGTTTGCAGAGGGAACCAAAATGGACTCACCTGAGAGACGTGCACAAGGCATTGTCCCTATGCAGGCAGGCCCTGTTCGGTGCTGAATCGGTGATCACAAAAATTAACCAGCATCATGAGACTATCGTTTTCGAGAAGAAGGATAGTCACTTGTGCACTGCTTTCATCACCAACAACCACACCAAAAATGCAGCCACCATAAGGTTCAGAGACACAGATTATTTTCTGCCACCACGTTCCATTAGTATCCTCCCCGATTGCAAGACCGTGGTCTTCAACACCCAAAATATTGCTTCACAACATAATTCAAGGAACTTCAAGAAGGCAAAAGATTCAAACAATTTCAACTGGGAGGTGTTTACTGAGAGCATTCCAGACGCCAAGGATATACCAGTTAGTTTAAATGTTCCCATTGAGCTTTATAAGTTGGTTAAAGACACCACAGACTATGCATGGTACACCACAAGCGTGCAATTGGGTCCGGAAGACTTGCCAACTAAGAATGACATATCCACCGTTCTTCGTGTTTTGTGTCTTGGCCATTCACTGCATGCCTTTGTAAATGGAGAATATATTGGATCAAATCATGGAACACATGAAGAGAAAACTTTTGTATTCCAGAAAACTGTAACCTTCAAGGTTGGAGTTAACAGCATAGCTTTCTTGGGTAACATCATTGGACTCCCCGATAGTGGTGCATACATGGAGCACAGGTATGCAGGACCAAAGTCTATATTCATCCTTGGTCTTAACTCTGGAAAAATTGATCTGACTCGTAATGGTTGGGGCACTAAGGTTGGAATCCAAGGAGAGGAGTATGCCGTTTTCACTGAAGAGGGATCAAAGAAAGTACAATGGCAACCAGTCCAGGGAACTGGAAAGCTTCTCTCGTGGTACAAGACAACTTTCACAACACCAGAGGGAAAGGATCCTGTTGCCATAAGAATGACTGGTATGGGGAAGGGAATTATTTGGGTCAATGGTAAAAGCATCGGTCGTCATTGGATGAGTTTCCTCTCTCCCCTTGGAACCCCTACTCAGTCAGAGTACCACATCCCAAGAACATACTTGAATCCAAAAGACAACCTCCTTGTGATATTTGAGGAAGAGCAAGCAAACCCAAATCAGATTGAGATTGTAACTGTTGAAAGAGATACAGTATGCAGTATCATCACAGAGAATCACCCTCCCAACGTAAATTCCTGGGCAGCTAAGGCTGGCAAGTTCCAGGCTGTTGTGGAAAAACCGTGGCCAACAGCTACAGTCACATGTCCAGTCTACAAAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTACAGGTTTCTGTGGAGAGTTTGTTATGGGAAAATGTGATGCCCCTGCCACCAAGCAGATTATTGAACAGCAATGCATGGGAAAAAATACATGCTCGATTCCACTTGAGGCGCAAACCTTCACCCAGGGCAAAGATCCTTGCCCAGATCTGTCCAAGACTCTTGCAATCCAAGTGAAGTGTGCCTTCTAG 2520 0.448 MSTMKLALITLLFIAVSPTFASGAEEEKKDPKGVDRGPKEITYDSRSLIINGKRELLFSGSVHYPRSPPEMWPHIIDKARRGGINVIQTYIFWNIHEPVKGKFKVDPEYDFVKFIQLCQDKGMYVTLRIGPFIQAEWNHGGLPYWLREVPGIIFRSNNDGFKTLMQNYVNTVIKMCTDAKLFGPQGGPIILAQIENEYNHIQRAYKEDGDKYVQWAANLAVSTNVGVPWIMCKQTDAPDPVINACNGRHCGDTFTGPNKPYKPFLWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYYGGTNFGRTSSGFSTTRYYDEAPLDEFGLQREPKWTHLRDVHKALSLCRQALFGAESVITKINQHHETIVFEKKDSHLCTAFITNNHTKNAATIRFRDTDYFLPPRSISILPDCKTVVFNTQNIASQHNSRNFKKAKDSNNFNWEVFTESIPDAKDIPVSLNVPIELYKLVKDTTDYAWYTTSVQLGPEDLPTKNDISTVLRVLCLGHSLHAFVNGEYIGSNHGTHEEKTFVFQKTVTFKVGVNSIAFLGNIIGLPDSGAYMEHRYAGPKSIFILGLNSGKIDLTRNGWGTKVGIQGEEYAVFTEEGSKKVQWQPVQGTGKLLSWYKTTFTTPEGKDPVAIRMTGMGKGIIWVNGKSIGRHWMSFLSPLGTPTQSEYHIPRTYLNPKDNLLVIFEEEQANPNQIEIVTVERDTVCSIITENHPPNVNSWAAKAGKFQAVVEKPWPTATVTCPVYKTIKAVEFASFGDPTGFCGEFVMGKCDAPATKQIIEQQCMGKNTCSIPLEAQTFTQGKDPCPDLSKTLAIQVKCAF 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02556 839 SUPERFAMILY (Trans)glycosidases 38 357 IPR017853 -
Viun11g02556 839 SUPERFAMILY Galactose-binding domain-like 595 743 IPR008979 -
Viun11g02556 839 Gene3D - 601 729 - -
Viun11g02556 839 ProSiteProfiles SUEL-type lectin domain profile. 754 838 IPR000922 GO:0030246
Viun11g02556 839 Pfam Galactose binding lectin domain 759 837 IPR000922 GO:0030246
Viun11g02556 839 Pfam Glycosyl hydrolases family 35 47 353 IPR031330 -
Viun11g02556 839 SUPERFAMILY Galactose-binding domain-like 417 578 IPR008979 -
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 265 280 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 127 146 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 51 68 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 184 199 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 302 317 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 630 644 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 72 90 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 657 673 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 PRINTS Glycosyl hydrolase family 35 signature 321 337 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 Gene3D Glycosidases 38 357 - -
Viun11g02556 839 CDD Gal_Rha_Lectin_BGal 752 837 - -
Viun11g02556 839 Gene3D - 431 558 - -
Viun11g02556 839 Gene3D - 747 839 IPR043159 -
Viun11g02556 839 PANTHER BETA-GALACTOSIDASE RELATED 32 743 IPR001944 GO:0004553|GO:0005975
Viun11g02556 839 FunFam Beta-galactosidase 38 357 - -
Viun11g02556 839 Pfam Beta-sandwich domain in beta galactosidase 365 433 IPR041392 -
Viun11g02556 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 186 198 IPR019801 GO:0004553|GO:0005975
Viun11g02556 839 Pfam Beta-galactosidase jelly roll domain 620 703 IPR025300 -
Viun11g02556 839 FunFam Beta-galactosidase 600 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02556 Viun-Chr11 38757196 38762819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02556 40 838 Glycoside Hydrolase AT2G16730 58.904 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02556 - - gmx:102663614 1313.9