Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02545 ATGGCTATTCAAACGCAGTGGTATCCAAATAATTCTGCTTCTTCTCCGTTCTGGAACAATGGTCATTGTGCTCCTGGCTTCATGGACTCCGGCATCAGTTTTCAGCACAAACAACAGCAACAGCTAGCAGAACAGCATTTGGGAGAGTTATGCAATGGGAGTCAGGGAGGAGCATTTGATCCAAATCTTCATGTGTGTAGTTCAAAAGGGATGAATTCTCCTATGTTTGCTATTCAGTTTGAGAAACAATGGGGAGAGATTGATCAGTATATGAAATCTGAGGATGAGAAATTGAGATACATGATAAAAGAGCATGGGAAACAACAGGTGATGGCATTGTTGAGAAAACTAGAAACTCGAACACTTCACGTCCTGAGAGAAAAAGATGTAGAAATTGCACAAGCCATGAAGAAAAGGTTAGAGTTAGAAGAGTATTTGAAAAGGTTAGAGGCCGAAAACAACAAATGGCAGAGGTTGGCTCAGGAGAAGGAAAACATGGCATTGACCCTTTACAAAACACTGGAGGAAATGACAGAAGGTGGAAACTTTTTGAACAATGGGACAGTGGCAAATGATGCAGTGTCGTGCTGTGGAGAAACTGGGGGAACTGAAGAGAGGGAAGAAGAAGAAGAGGAAGAAACTGCAGAAAAAGGTTTAGAATGTGGAGGGGTGAATGTGGATGAAGTTGAACAGATTACGAGAAAAGGAGGAGTAATGGTTTGTAAAAGCTGTCATTCTAGGAGGTCGTGCTTTCTGTTCCTCCCATGCAGGCACCTTTCTTCCTGCAAAGTTTGCAACGCTTCCCTCGAGGCTTGCCCCGTCTGCAGAACACCAAAGAAAGCTACCATTGAGTTGAGACTTTGA 864 0.4317 MAIQTQWYPNNSASSPFWNNGHCAPGFMDSGISFQHKQQQQLAEQHLGELCNGSQGGAFDPNLHVCSSKGMNSPMFAIQFEKQWGEIDQYMKSEDEKLRYMIKEHGKQQVMALLRKLETRTLHVLREKDVEIAQAMKKRLELEEYLKRLEAENNKWQRLAQEKENMALTLYKTLEEMTEGGNFLNNGTVANDAVSCCGETGGTEEREEEEEEETAEKGLECGGVNVDEVEQITRKGGVMVCKSCHSRRSCFLFLPCRHLSSCKVCNASLEACPVCRTPKKATIELRL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02545 287 Coils Coil 132 166 - -
Viun11g02545 287 PIRSF SBP1_RNase_bind 28 287 IPR017066 -
Viun11g02545 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 285 IPR013083 -
Viun11g02545 287 ProSiteProfiles Zinc finger RING-type profile. 241 276 IPR001841 -
Viun11g02545 287 Pfam Zinc finger, C3HC4 type (RING finger) 240 280 - -
Viun11g02545 287 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 74 284 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02545 Viun-Chr11 38710900 38712469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02545 240 277 Miscellaneous Gene Families AT2G21380 42.105 6.16e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02545 K19042 - gmx:100789863 377.867