Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02541 ATGGAAGTTAACCTCTCTCTCAACCGCCACCGCGCCCTCTCTCTCACCTCCCACGCTCCCTCCCTCTCCGCTCTCCGCTCACACTTCCTCGCCTCCACGCACTCTCTCCGATTCCCTCCCTCGCCACCCTCCCTTCGCTCCCGGAACAGACGCACCACCAGCCGCAACTCAGGTCTCCTCCGCATCCACTCCCCGCGCTTCGTCTTCAAGGCCTCCTTCCATTCCCACTCCGTCGTCGTCCTCGTCATCGTCGTCACTTTATCCGCCGTTTCCTGGCTCCACTTCACTCTCACCAAGAAAAAAAACAAGTCTCTTAACCAGACACGGGGGCTTACGAATTTCGCATTATCGCCTCAGGGAACTAATGTTGGGAGTCAGGTCATTGATGGCGAGATTCTTGGTTTCACGGAATTTCAAAGGGATAACACGCTGGCTGAGATTGGGAAGTTGAAGGATGAGTACCGGGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTACAAGAAGTGGCCATCGCCACCGAGACTTCAGAGTCATCTTCTGTTCTGGACTCTGGTTTGAATAATAATAATAATAATAATAATAATAATATTAATAATAGTAGTAGTAATAGTTCCAAGGTATTGGATGAGTCTTTTTTATCTGTGCCTTTCTCATCAACTTCGTTACCACCTCTGGAGTTTGCTGAGGAAATGGCTATACACGTGGAAGAAAGTCAAGATAAAGTTAACTCTGATACCGAGTTTCCTTTAATTGACGTCGAATCCGAGCATACTGCTTTGTCTGTTCGCGTAAACAACGCAGTGGCGGCGACTGTTGTTGGACTTACTGAAGAAAAGATTGAGCTTGGTTCCATGAATGGTGAGGTCCTTTTTGGAGAGTCCGTAAGGGAAGGGCTCTACATGTTTTATGAGGTTAACAAGCCTGCAACTGGATCTATGACACCGCTGAGTGGTTTAAAGTCATTATCTCCCCGTGCTTCTTTTATGAATAAAAAAAGGTCGCCCTCAGTGATGGGAAATGCCACACTGAAAGGAACAGGGTTATCTACAGATATTCCTCTACAAGAAGCAGAACATGTCAAAGGAGCAGCTGAATTTTCCAGTCATAATGGCTACCCTCTGCAACATGTGAGTAAAAACTTGAGGAGGGGCAGAAGCTCTTCAAGAGACAGGGAAAGAACCAACGTGGATTACAATAATAACACAGTTTTCCCCCAGGCTCACTCAATGAAGATGCATATTGATCTGAAAAATGATAAAATCATGGTGCCTGATGATCAGAAAAATGACCCTTCAGAGCATCTAAGCAAATATAATAATTTGCTAAAAGTTGGGAGGGTACATGAATGTGTAGAAGTGCTTAAACATATGGAAACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACACCTGCAAGAAACGAAAGGCTGTTAAAGAAGCTTTTGATTTCATTAAACTCATTCCAAATCCAACGCTGAGTACATTTAACATGCTTATGTCGGTGTGTGCAAGCTCCCAAGATTCAGAAAGGGCTTTCCATGTTTTGCAGCTTCTTAAGAATGCTCAACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTACGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAATAGCCAAAGCATTTGGCGCTTATGGAATATTGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCAAATCAGGAGCTGTAGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGGTGAAACGCAGCCCATTGACCCTGATCACGTAACTATAGGTGCATTGTTGAAGGCATGCACTAAAGCTGGTCAGGTTGAACGTGCAAAAGAAGTGTACAAGATGGTACAAAAATATAACATAAAGGGATGCCCCGAAGTTTACACCATTGCCATTAATTCGTGCAGCGAAACAGGGGATTGGGAATTTGCTCTTGCTGTATACAATGACATGACCCAGAAAGGGATCCAACCAGATGAGATATTTCTGAGTGCACTGATAAATGTTGCTGGTCATGCTAAAAATCTGGATGCTGCCTTTGATGTTCTACAACAAGCCCGTGAAGGAGGAATACGAATTGGAATAACGTCATATAGCTCATTGATGGGTGCCTGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAGTCTCTTAAATTGTCAATAACAGTTTCAACAATTAATGCTTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAAAAGGCTTTGGAGGTTTTTTTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCGGTACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAAATGCTTCTTTCTCAAGCCAAAAAAGATGGTGTAGCCACCAATCTCATAATATGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCGATGTTGGTGAGCCTGTTTTATCTTTTCACTCAGAACGGCCTCAAGTTGATAATAAATGGACATCGCTGGCCTTAACGGTGTTTCGTGATACAATTGACGCTGGTCAAAAACCTACAATTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTTCCTTATGATACATCTCTGAAAAATAGACTTATTGAGAACCTAGGAGTTAGTGCAGATACTTCAAGAGGATCAAACCTCTGTTCATTACTGGATGGATTTGGTGAATACGATCCTCGTGCTTTTTCTATACTTGAGGAATCTGCTTCATATGGAGTTGTTCCATTTGTATCATTTAAAACGAGTCCCATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTGTACCTCATAACAGTTTTCAAAGGTCTCAAGCATAGACTGGCAGCAGGTGCAAGAATTCCCAACATAATCATTTTATTGCCTGTAGAGAAAACAGAAGTTGTGTCTCAGAAGGGGGAGAAGATTATTAACCTTGCTGGAAGAGCTGGCCAAGCAATTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCATCAGGGTAATGAATCGAATGGCAAGCTTAGAATTCATGGTGTGGCTCTGAAAAAATGGTTCCAGCCAAAACTTACATCTCCATTTAGCGGAAAACCAGGTGATTGGAGTTCCTCCATCTCACGACTGGGTAAAGGTATCAGTCATCAGCAACGAAACATCCGAGTTGGCAATCTGTCTTTGGACTAA 3384 0.427 MEVNLSLNRHRALSLTSHAPSLSALRSHFLASTHSLRFPPSPPSLRSRNRRTTSRNSGLLRIHSPRFVFKASFHSHSVVVLVIVVTLSAVSWLHFTLTKKKNKSLNQTRGLTNFALSPQGTNVGSQVIDGEILGFTEFQRDNTLAEIGKLKDEYRVFEENEIHLPFLKSSVVQEVAIATETSESSSVLDSGLNNNNNNNNNNINNSSSNSSKVLDESFLSVPFSSTSLPPLEFAEEMAIHVEESQDKVNSDTEFPLIDVESEHTALSVRVNNAVAATVVGLTEEKIELGSMNGEVLFGESVREGLYMFYEVNKPATGSMTPLSGLKSLSPRASFMNKKRSPSVMGNATLKGTGLSTDIPLQEAEHVKGAAEFSSHNGYPLQHVSKNLRRGRSSSRDRERTNVDYNNNTVFPQAHSMKMHIDLKNDKIMVPDDQKNDPSEHLSKYNNLLKVGRVHECVEVLKHMETKGLLDMTKVYHAKFFNTCKKRKAVKEAFDFIKLIPNPTLSTFNMLMSVCASSQDSERAFHVLQLLKNAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQIAKAFGAYGILRSKNVKPDRVVFNALIAACAKSGAVDRAFDVLAEMAGETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSCSETGDWEFALAVYNDMTQKGIQPDEIFLSALINVAGHAKNLDAAFDVLQQAREGGIRIGITSYSSLMGACSNARNWQKALELYEYLKSLKLSITVSTINALLTALCDGDQFQKALEVFFEMKGLGLCPNSITFSVLIVASEKKDDMEAAQMLLSQAKKDGVATNLIICRCIIGMCLRRFEKACDVGEPVLSFHSERPQVDNKWTSLALTVFRDTIDAGQKPTIEILSQILGCLQLPYDTSLKNRLIENLGVSADTSRGSNLCSLLDGFGEYDPRAFSILEESASYGVVPFVSFKTSPIVIDAKELHASTAEVYLITVFKGLKHRLAAGARIPNIIILLPVEKTEVVSQKGEKIINLAGRAGQAIGALLRRLQIPHQGNESNGKLRIHGVALKKWFQPKLTSPFSGKPGDWSSSISRLGKGISHQQRNIRVGNLSLD 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02541 1127 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 12 1126 - -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 753 784 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 575 608 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 647 678 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 506 539 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 683 716 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 788 820 IPR002885 -
Viun11g02541 1127 NCBIfam pentatricopeptide repeat 541 574 IPR002885 -
Viun11g02541 1127 Gene3D Tetratricopeptide repeat domain 445 599 IPR011990 GO:0005515
Viun11g02541 1127 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 638 729 - -
Viun11g02541 1127 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 452 583 - -
Viun11g02541 1127 Gene3D Tetratricopeptide repeat domain 600 675 IPR011990 GO:0005515
Viun11g02541 1127 Coils Coil 140 160 - -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Viun11g02541 1127 Pfam Pentatricopeptide repeat domain 808 866 IPR002885 -
Viun11g02541 1127 Gene3D Tetratricopeptide repeat domain 676 803 IPR011990 GO:0005515
Viun11g02541 1127 Gene3D Tetratricopeptide repeat domain 804 927 IPR011990 GO:0005515
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Viun11g02541 1127 Pfam Pentacotripeptide-repeat region of PRORP 653 795 IPR033443 -
Viun11g02541 1127 Pfam Pentacotripeptide-repeat region of PRORP 483 636 IPR033443 -
Viun11g02541 1127 Coils Coil 830 850 - -
Viun11g02541 1127 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 730 877 - -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Viun11g02541 1127 MobiDBLite consensus disorder prediction 371 400 - -
Viun11g02541 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Viun11g02541 1127 MobiDBLite consensus disorder prediction 186 209 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02541 432 855 Glycosyltransferase AT1G05670 25.408 7.45e-34 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02541 - - gmx:100814164 1721.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02541 11 38684137 38693650 Viun11g02541 11 38684137 38693650 ECH