Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02505 TTTGCATTCACAGAGAGCCATGGCTTTCAACCTCACACACTCTACACTACCTTCTTCTTCTTCTTCTTCTTCCATTTCACACCATTTTCATGTTCATACTCTTTCAAAACCTCTTTTTCTTACACACTCCAAAATCTCAACCTCTCTAATCTCCAAAACCCTTTGTCTTTGTGCTTCACCATTCAACACCACCCAACCTTCACCAACCCCATTTTCCTCCCATATCTCCAACAAGAACATGAACCAGAAGAACAAGAGGTCATAGAAACAATAGAAGAAGTAGAAGAAGAAGCTCGTGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTAGGATTTCCTTCCAAGACCCGGGAAAAGAAGGAAGGTTGTCGCTTCAGAAGAACCGTCGCATATCATGGCACCTTGCTTCTGACACCAGTGACCTTGTTGAAGAAGAATCTGTAACGGGTTTGGAGGATGGTTCCTTGGTTGAAGAAAAGAAAGAAAGGGTGTGTGAGAAAAAGGGTTTGCCTTTACCTGAGGGGATTGTGGGAGAGATTGTTCAGATTGCAAGGAACTTGCCTCAGAATCTTACTCTGGAAGAGGGTTTGGTTGAATACGAAGGAAGGGTTAGTGAGAAAGATTGTTGGGAGGTTTTGAAATCACTTGGGGAGGAGCACCTTCTGGTGTCTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTGGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAGGCGAGGATGGCTGATAAGTTGATAGTTTTGTTCTCAAACTTACCGTCCACCAAGGAGTTCAGAGATGCTCATGTTTACAATGCTGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTATGAAGATGCTTGGAAAGTGTATGAGTCAATGGAAGCTGATAATGTTCTTCCGGATCAAGTGACATGTTCTATTATGGTTATTGTTATGAGAAAACTTGGCCACAGTGCAAAAGATGCATGGCAATTTTTTGAAAAAATGAATGGAAAAGGAGTCAAGTGGGGTGAAGAAGTCCTAGGTGCACTCATAAAGTCATTTTGTGTTGAGGGTTTGATGAGGGAAGCTCTCATCATCGTATCTGAAATGGAGAAGAAAGGGGTTTCCCCAAATGCTATTATGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTTCTTGTTGAGATGAAAGATAAAGGGATTAAGCCCACTGAAGCTACGTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAGCCTGAGATTGTGGAGAAGCTGATTGCTGAAATGCTGGATGTAGGGTTGAAGCCAAATGCCAAATCATATACTTGTCTAGTCAGTGCATATGGAAAGCAGAAAAAGATGAGTGACATGGCTGCAGATACATTCTTGAAGATGAGGAAAGATGGTATCAAACCCACTTCACATTCTTACACAGCTCTTATCCATGCATATTCAGTTAGTGGCTGGCATGAAAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCATCCATAGAAACCTACACTGCATTACTAGATGCATTTAGACGAGCTGGTGATACTGAAACATTAATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGTGTGACATTCAATACTCTAGTTGATGGTTTTGCTAAACATGGTCATTACAAGGAAGCAAGAGATGTAATATCTCAATTTGGTAAAGTTGGATTGCATCCAACATTGTTGACTTACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGATCGTAACTTAAAGCCAGATTCTGTAACTTATTCAACTATCATATATGCATTTCTCCGTGTTAGAGATTTTGCACAGGCATTCTTTTATCACCAGGAGATGGTCAAGAATGGTCAAGTAATGGATGCCAATTCTTACCAGAAGCTTCGGGCGATTCTTGATGTTAAAGCTTCAATGAAAAACAGAACGGATAGGAGATCCTTGATTGGTGTGGTTAGAAATAAGATGGGTGTTGTGAAAGCTAAGAGGAAAAAGGATGAGTTTTGGAAGTTCAGGAAAAGACATGTTAGAAATCAGTAG 2172 0.4134 FAFTESHGFQPHTLYTTFFFFFFFHFTPFSCSYSFKTSFSYTLQNLNLSNLQNPLSLCFTIQHHPTFTNPIFLPYLQQEHEPEEQEVIETIEEVEEEARDPDDPIYKFFKTRTRISFQDPGKEGRLSLQKNRRISWHLASDTSDLVEEESVTGLEDGSLVEEKKERVCEKKGLPLPEGIVGEIVQIARNLPQNLTLEEGLVEYEGRVSEKDCWEVLKSLGEEHLLVSCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMADKLIVLFSNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDQVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMREALIIVSEMEKKGVSPNAIMYNTLMDAYCKSNRVEEAEGLLVEMKDKGIKPTEATFNILMYAYSRKMQPEIVEKLIAEMLDVGLKPNAKSYTCLVSAYGKQKKMSDMAADTFLKMRKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTETLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGHYKEARDVISQFGKVGLHPTLLTYNMLMNAYARGGRHSKLPELLEEMADRNLKPDSVTYSTIIYAFLRVRDFAQAFFYHQEMVKNGQVMDANSYQKLRAILDVKASMKNRTDRRSLIGVVRNKMGVVKAKRKKDEFWKFRKRHVRNQ 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02505 723 NCBIfam pentatricopeptide repeat 493 526 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 563 596 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 458 491 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 599 632 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 387 421 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 529 559 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 633 666 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 356 386 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 282 314 IPR002885 -
Viun11g02505 723 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Viun11g02505 723 Gene3D Tetratricopeptide repeat domain 473 585 IPR011990 GO:0005515
Viun11g02505 723 Gene3D Tetratricopeptide repeat domain 182 329 IPR011990 GO:0005515
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Viun11g02505 723 Gene3D Tetratricopeptide repeat domain 587 665 IPR011990 GO:0005515
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Viun11g02505 723 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 196 490 - -
Viun11g02505 723 Pfam Pentatricopeptide repeat domain 443 502 IPR002885 -
Viun11g02505 723 Pfam Pentatricopeptide repeat domain 515 570 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Viun11g02505 723 Pfam PPR repeat 356 382 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 490 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Viun11g02505 723 Pfam PPR repeat family 384 431 IPR002885 -
Viun11g02505 723 Pfam PPR repeat family 279 322 IPR002885 -
Viun11g02505 723 Pfam PPR repeat family 596 642 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Viun11g02505 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Viun11g02505 723 Gene3D Tetratricopeptide repeat domain 330 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02505 Viun-Chr11 38479112 38482572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02505 255 673 Glycosyltransferase AT1G05670 25.298 1.20e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02505 - - ccaj:109799145 1118.22