Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02502 ATGAGAAAAATGAAGGCGTGGAGGAGGCTGTTCTATGTGGCGGTGTTTGAGGCGGCGTTGATCGGAATGTTGATCGGAAAGGGAAGCGGTCATGACTATTGGGACGCATTGTCGAAGGCAATTATTTTCTTCGAGGGACAGCGATCGGGAGTCCTGCCGCAGGATCAGAGAATGAGTTGGCGACAGAACTCCGGTCTCAGTGACGGCTGGAACTACAACACGGATCTCACCGGCGGTTACTACGACGCCGGGGACAACGTGAAATTCGGGTTTCCGATGGCCTTCACCACCACAATGCTGGCGTGGAGCGTGCTGGAATTCGGAGACCTCATGCCTCCCAATGAGCTCAGGAACGCCCTCGTCGCAGTTCGTTGGGCCACTGATTATCTTCTCAAGACTCTTTCTCAGCCTAATCGGATTTTCGTTCAGGTGGGTGATCCAAACTCAGATCACGATTGTTGGGAGAGGCCAGAGGACATGGATACAGCGAGGACCACGTATGCTATTGATGCACCAAACGCCGCTTCCGATGTCGCCGGCGAAACCGCCGCCGCACTAGCAGCCTCATCCATGGCGTTCCGGTCATCAGACCCCGGTTACTCAGAGACATTGCTTCGAAATGCTATTACTGCCTTTGAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGAAAATCTCAAGTATAATGCCTGCCCCTATTACTGTGATTTTAATGGCTATCAGGATGAGCTGTTATGGGGAGCTGCATGGCTAAGGAGGGCGACGCAGGACGATAATTTTCTGAACTACATTGAAAGCAATGGTAAAACTCTTGGTGCAGAAGACACCATCAATGAGTTTGGCTGGGACAACAAGCATGCTGGCCTCAACGTGCTTCTCTCCAAGGAAGTTATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCCTCAGCAGAGAGCTTCATTTGCACAATGATACCTGAATCACCAAGCTCAAACATGGAGTACACACCTGGTGGACTTGTGTACAGATCCGGAGGCAGCAATTTGCAGCATGCAACTTCAATTGCTTTCCTTGAACTGGTGTATGCCAATTACCTAACACACACTTCACAAGTCATCACTTGTGGCAATGTCTATGTGAGTGCACAAACTCTTCGCCAACATGCTAAGAGACAAGTTGATTACATTTTGGGTGATAACCCAATGGGACTATCCTACATGGTTGGGTACAGCAACTACTATCCTCAACGTATTCATCATCGTGCCTCTTCTTTGCCCTCCATCAAGGATCATCCCCACTTCATTGCATGCAAAGAAGGTTCAATCTACTACAACTCAACAAATCCCAATCCTAATCTACTTGTTGGTGCCATTGTTGGAGGACCTGACCAAAATGATGATTATGTCGATGATCGATTTGATTTTAGGGAATCTGAACCCACCACATACATTAATGCACCATTTGTTGGGGTGTTAGCATATTTTGCTGCAAATCCCAGCTTTAGTTGA 1500 0.4793 MRKMKAWRRLFYVAVFEAALIGMLIGKGSGHDYWDALSKAIIFFEGQRSGVLPQDQRMSWRQNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDLMPPNELRNALVAVRWATDYLLKTLSQPNRIFVQVGDPNSDHDCWERPEDMDTARTTYAIDAPNAASDVAGETAAALAASSMAFRSSDPGYSETLLRNAITAFEFADNYRGAYSDNENLKYNACPYYCDFNGYQDELLWGAAWLRRATQDDNFLNYIESNGKTLGAEDTINEFGWDNKHAGLNVLLSKEVIEGNMYSLESYKSSAESFICTMIPESPSSNMEYTPGGLVYRSGGSNLQHATSIAFLELVYANYLTHTSQVITCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRASSLPSIKDHPHFIACKEGSIYYNSTNPNPNLLVGAIVGGPDQNDDYVDDRFDFRESEPTTYINAPFVGVLAYFAANPSFS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02502 499 FunFam Endoglucanase 29 497 - -
Viun11g02502 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Viun11g02502 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Viun11g02502 499 Gene3D - 30 495 IPR012341 GO:0005975
Viun11g02502 499 SUPERFAMILY Six-hairpin glycosidases 12 494 IPR008928 GO:0005975
Viun11g02502 499 PANTHER ENDO-1,4-BETA-GLUCANASE 24 493 - -
Viun11g02502 499 Pfam Glycosyl hydrolase family 9 33 489 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02502 Viun-Chr11 38467459 38472832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02502 6 495 Glycoside Hydrolase AT1G70710 59.592 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02502 K01179 - gmx:100101849 927.932