Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02496 ATGGGGAGTTTGAGATCGATTCTGAAGCATCCAGATGACTTTTACCCGTTGATGAAGCTCAAAATGGCCGCCAGAAACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCCTTCTGTTACACTATGCTCCACAAGGTTTCTAGAAGCTTCGCGCTCGTCATTCAGCAACTCGGTACCGACCTTCGCAACGCGGTTTGCATATTCTATCTGGTCCTTCGAGCGCTCGACACCGTTGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATTCTGATAGCCTTTCACCGTCATATTTATGATCGCGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGATTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTACAAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTTGAAACAATTGAGGACTATGATGAATATTGTCACTACGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTCTTCCATGCCTCTGGTTCAGAAGATCTGGCTTCTGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATCATTCGAGATTATCTGGAAGACATCAATGAAATCCCCAAGTCACGCATGTTCTGGCCACGAGAGATTTGGAGTAAATATGTTAACAAACTTGAGGATTTGAAATACGAGGAGAACTCTGTTAAGGCAGTACAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAATATACATGGCTGCTTTGAAGGACCTTGCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTTGCATTATGTTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTTTAACTGCCAAGGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGCGCTTTCTTTGATTTTGCTTGTGTGTTGGAGTCTAAGGTTGACAAAAATGATCCCAATGCAACAAAAACATTGAGTAGGCTGGTAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGAAAATCATACATTGTGAAGGATGAAAGTGGATTCGGCTCAACCATGATTGTCATCTTGGTCATCCTGGTTTCCATCATTTTTGCTTATCTGTCGGCTAACCACCATAATAACTAG 1242 0.4275 MGSLRSILKHPDDFYPLMKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQIHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIEDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDCLIYMAALKDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACVLESKVDKNDPNATKTLSRLVAIQKTCRESGLLSKRKSYIVKDESGFGSTMIVILVILVSIIFAYLSANHHNN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02496 413 FunFam Squalene synthase 1 34 370 - -
Viun11g02496 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Viun11g02496 413 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Viun11g02496 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Viun11g02496 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 404 IPR044844 GO:0004311
Viun11g02496 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Viun11g02496 413 SFLD Isoprenoid Synthase Type I 36 325 - -
Viun11g02496 413 SUPERFAMILY Terpenoid synthases 36 367 IPR008949 -
Viun11g02496 413 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Viun11g02496 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Viun11g02496 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02496 K00801 - gmx:547940 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02496 11 38432445 38438237 Viun11g02496 11 38432445 38438237 ECH