Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02495 ATGGCATTCAAACTCAAATCACTACCTCTTTCTTACTCTCTTCACTCCTCTCCCCGCCAAAACCCTAATTTCACGCTTCTAAACCATCGTCTTCCTCGTCGTTTCTCTGCTCCTTCTCTTCCTCTCAGTCTCTCTCTCTCAACCACAGCTTCAGCATCCACGTTTCATCGCACCGCCTTCGTAACCGCTCGCGCTGTTCGAAGTGATGAAATCGTTGACGAAGGCGAAGAAGACAAAGATGAAGAATTATCGAGGCAGGGTGAGAAAAAGGAGCTAGTGAATCAAGGAATATGGAGTCAGATGAAGGACATTGTGATGTTTACAGGTCCAGCAACCGGACTTTGGATATGTGCACCACTCATGAGTCTCATCGATACTGCGGTTATTGGTCAGAGAAGCTCCGTTGAACTTGCTGCTCTAGGTCCTGGCACTGTTGTTTGTGATTACATGAGCTACGTGTTCATGTTTCTATCAATTGCCACTTCCAATATGGTTGCCACTGCCCTCGCTAAACAGGACAAAGAAGAAGTACAGCACTACATATCTATCTTGCTTTTTGTTGGGTTATCTTGTGGCATTGCGATGCTTTTGTTCACTAGGCTATTTGGTGCTGCAATAATAACTGCTTTCATCGGACCAAAGAATGCACACGTAGTACCTGCAGCTAGCAATTATGTAAAGATTCGAGGCTTGGCATCGCCTGCCTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCCTTGAAAGCTTTGGCTGCTGCTAGTTTTATAAATATAAGTGGTTGTATAATTTTGTGCATCTGTTTAGGCTACGGTATTGTAGGGGCAGCATGGGCTACAATGGTTTCACAAGTTGTTGCTGCTTGCATGATGATTCACACTCTAAACAATAAGGGATATAATGCCCTTGCCTTCTCCATTCCTTCAGGGAAGGAACTTTTGACGATATTTGGGCTTGCGGCTCCTGTATTTATGACAATGATGTCAAAGGTGGCTTTCTACTCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACGTATTCCATGTGTACAGTATGGGGTGAACCTCTCTCTCAAACTGCTCAGTCATTTATGCCTGAACTGATATATGGAGCAAATCGGAGTTTATCAAAGGCCCGATTGCTTCTAAGGTCTCTTGTGATAATTGGAGTTATACTTGGCTTATTGTTAGGGATTGTTGGAACTTCAGTTCCTTGGTTATTTCCCTTCATTTTTACACCTGATCGGATGGTCACCCAGGAGATGCATAAGGTGCTGATTCCATATTTTATAGCCCTTGCTGTAACACCCCCTACTATCAGCCTCGAGGGAACATTGCTGGCTGGGCGGGATCTGAGATTTATAAGTTTATCAATGGCTGGATGCTTTTGCGTGGGTTCACTAGTATTATGGGCCTTGAGTAGTAGATTTGGCTTGCTAGGCTGCTGGTTTTCCCTGGCAATATTTCAATGGGCTCGGTTTTCGATGGCCCTCCAGCGTCTTCTTTCTCCCAAGGGCATTTTATACTCCGAAGATACAGACAGGTATGAGCTCCTAAAGCTAAGGACTGCCTAG 1635 0.4453 MAFKLKSLPLSYSLHSSPRQNPNFTLLNHRLPRRFSAPSLPLSLSLSTTASASTFHRTAFVTARAVRSDEIVDEGEEDKDEELSRQGEKKELVNQGIWSQMKDIVMFTGPATGLWICAPLMSLIDTAVIGQRSSVELAALGPGTVVCDYMSYVFMFLSIATSNMVATALAKQDKEEVQHYISILLFVGLSCGIAMLLFTRLFGAAIITAFIGPKNAHVVPAASNYVKIRGLASPALLVGWVAQSASLGMKDSWGPLKALAAASFINISGCIILCICLGYGIVGAAWATMVSQVVAACMMIHTLNNKGYNALAFSIPSGKELLTIFGLAAPVFMTMMSKVAFYSLLIYFATSMGTHTMAAHQVMVQTYSMCTVWGEPLSQTAQSFMPELIYGANRSLSKARLLLRSLVIIGVILGLLLGIVGTSVPWLFPFIFTPDRMVTQEMHKVLIPYFIALAVTPPTISLEGTLLAGRDLRFISLSMAGCFCVGSLVLWALSSRFGLLGCWFSLAIFQWARFSMALQRLLSPKGILYSEDTDRYELLKLRTA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02495 544 NCBIfam MATE family efflux transporter 110 503 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun11g02495 544 Pfam MatE 116 271 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun11g02495 544 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 68 526 IPR044644 -
Viun11g02495 544 CDD MATE_DinF_like 100 514 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02495 Viun-Chr11 38417735 38425390 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02495 K03327 - gmx:100778295 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02495 11 38417735 38425390 Viun11g02495 11 38417735 38425390 ECH