Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02472 ATGCTTGTGTTGTTTGAAACTCCTGCGGGGTTTGCCCTGTTTAAAGTTCTGGATGAAGGCAAGCTTTCAAAAGTTGAGGACTTGTGGAAGGACTTTTCCAGCGCGGACACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTCGAAAACACTTCAGAAGCTCTAGAGGCAGCCACTTTATTAATTGATGGAAAAGCAAGCAAGGGCCTGCGCAAGTTCTTGCGTGTTCATTGTGAAAATGAAACACTGGGTGTGGCTGATTCGAAACTTGGGAATGTGATTAAAGAGAAATTGAAAATCGACTGTATTCACAATAATGCAGTCATGGAGTTGATGAGAGGTGTCAGAAACCAGTTAACTGAACTCATATCTGGTCTTGCTGTTCAAGACATGGCTCCAATGAGCTTGGGTTTATCCCATAGCTTATCCAGATACAAGTTGAAGTTTAGTGCAGATAAGGTGGATACCATGATTGTTCAAGCTATTGGTTTACTTGACGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGTGAATGGTATGGTTGGCATTTCCCTGAACTTACTAAAATAATACAAGATAACATCCAATATGCAAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCTGCTGAGCTTGATTTCTCTGAGATTTTGTCTGAGGAAGTGGAGGCAGAACTTAAGGAGGCATCTGTAATATCTATGGGAACCGAAATCGGGGAGCTTGATTTAGCAAATATTAGGGAACTCTGTGATCAGGTTTTGGCTCTTTCGGAATACAGGGCACAACTCTATGATTATCTAAAGAGTAGGATGAACACCATTGCACCCAATTTGACTGCGATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCCAAGCAGCCTGGTAGCACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTTTTCAGGGCTCTGAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCATCCTTGATTGGTCAGGCAGCTGCAAAGTTCAAGGGCAAAATTTCTCGGTCACTTGCTGCAAAGACAGCATTGGCTATTAGGTGTGACGCACTTGGAGATGGCCAAGACAACACGATGGGATTGGAGAACAGAGCGAAGCTTGAGGCGAGATTGAGGAACCTTGAAGGCAAAGAGTTGGGCCGTTTTGCTGGTTCTGCTAAGGGAAAACCGAAGATAGAAGCTTATGATAAGGACAGAAAGAAAGGAGCGGGAGGACTGATAACGCCGGCTAAGACATATAATACTGCGGCTGATTCTGTTATTGGGCAAATCAATTCTGCCATGGATGAGGATACACAAGAGGCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAGGAAAAGAAGAAAAAGAAGGGTAATAAAAATGAAGAGGATGCAACTGCTCAAGCTGATGGAAATGTTGCTGAGGAGGCAGAACCTGAAGTTGTGAAGAAAGAAAAGAAGAAGAAAAGGAAGGAGGCTAGTGAGAGTGCTGAGGTGCAGAATGGGAATGAGGAGTCGAATGCAGGAGAGAAGAAGAAAAAGAGGAAAAAGCAGGCAGAGCAAGAAGAATCTGCTGAAATGCCAAGCAAGAAGAAAGGGAAAAAAAGAAAACTGAGGACTAAAGTGTAA 1677 0.4329 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYARAVKLMGDRVNAAELDFSEILSEEVEAELKEASVISMGTEIGELDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNTAADSVIGQINSAMDEDTQEASVADKKKEKKEKKKKKGNKNEEDATAQADGNVAEEAEPEVVKKEKKKKRKEASESAEVQNGNEESNAGEKKKKRKKQAEQEESAEMPSKKKGKKRKLRTKV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02472 558 Coils Coil 459 479 - -
Viun11g02472 558 FunFam Nucleolar protein 58 284 405 - -
Viun11g02472 558 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Viun11g02472 558 MobiDBLite consensus disorder prediction 492 514 - -
Viun11g02472 558 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Viun11g02472 558 MobiDBLite consensus disorder prediction 521 546 - -
Viun11g02472 558 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 532 IPR045056 GO:0030515|GO:0031428|GO:0032040
Viun11g02472 558 FunFam Probable Nucleolar protein 58 129 283 - -
Viun11g02472 558 Gene3D - 129 284 - -
Viun11g02472 558 Gene3D Nop domain 285 397 IPR042239 -
Viun11g02472 558 MobiDBLite consensus disorder prediction 449 558 - -
Viun11g02472 558 SMART NOSIC_2 159 211 IPR012976 -
Viun11g02472 558 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Viun11g02472 558 SUPERFAMILY Nop domain 153 397 IPR036070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02472 Viun-Chr11 38258366 38262642 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02472 K14565 - gmx:100775301 911.753