Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02470 ATGGTTGTCCTTGCTGCATCCATTGTGAGCAAATCTGGAAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGTCTTCTAGCAGCATTTCCCAAATTGGTAGGCACCGGAAAGCAGCACACATTTTTTGAGACGGAGAACGTACGCTATGTTTACCAGCCAATAGAAGCACTCTATCTACTTATTATAACAAACAAAAGTAGCAACATACTGGAAGATTTGTCAACTCTCAGACTCCTCTCCAGACTTGTGCCTGAATATTCTTACTCCCTCGATGAAGAGGGTATTTGCGAACATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGCACTACTGTGAGATGGAGAGTCATGAAGAAAAACTGCACAAACTAGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTTGAAAAGAACAAAGGAGAGAAAGGGGGATTTGGTCCCTCACAGGCACTAGGCTCTGGAAAAATTGAAAATAGCCTTAGTGATTTGAGCATATCTAGCAGCGGAACTGCTTTTGGAAGTGGCTCTGGTCTCGGATTTAGTTCTGATGTTGATTCCTTTCCTACCAAGTCTAAAGGTCGTCCTACATCATCTGCTACTGCTCCACCAAAAGGTCTTGGAATGAAGCTTGGTAAATCCCAAAAGACAAAACAGTTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCTTTCTTGAAGATGTTCAACCAAAACCTGGCCTGTCTCAGGCAGCTGCCCCACCACCTACGGATCCCATCACTTTAACTGTTGAAGAAAAACTAAATGTGACACTAAAACGAGACGGTGGAATCGGTAATTTTGATGTTCAAGGCACAATGTCCCTCCAAATTCTCAGCAAAGAGGATGGACACATTCAAGTTCAGGTCCAGACTGGTGACAATCAAGCCATCATTTTCAAGACACACCCCAACATGAATAAAGATTTATTTTCCAATGAAAATATACTAGGCCTAAAGGATCCCAATAGACCTTTCCCCACTGGTCAAACTGGTGGTTCTGAAGGTGTGGGTCTTTTAAAGTGGAGAATGCAAAGCACTGATGAATCAATGGTACCGCTGACAATCAACTGCTGGCCCTCTACTTCTGGAAACAATACTTATGTCAGCATCGAGTATGAGGCTTCCTCAATGTTTGATTTGCGGGATGTTATGATTTCAGTACCTCTTCCATCTCTTCGGGAAGCACCATCTGTTAACCAGATTGATGGGGAATGGAGGTATGATTCCAGGAATTCCCTTTTAGAGTGGACTATCCTTATGATTGATAATTCAAACCGCAGTGGATCAATGGAATTTGTTGTTCCGCAAGCTGATCCATCAGCATTCTTCCCCATTTACATTCATTTTACAGCAACAGATACATTTAGCAAACTGAAGGTCACCAACACCATACCGCTAAAGGGTGGTAATCCTCCAAAGTTTTTTCAGAGGACACAGTTGATCACAGAAAACTACATGGTTGTGTGA 1593 0.4193 MVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTFFETENVRYVYQPIEALYLLIITNKSSNILEDLSTLRLLSRLVPEYSYSLDEEGICEHAFELIFAFDEVISLGHKENVTVAQVKHYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKVEKNKGEKGGFGPSQALGSGKIENSLSDLSISSSGTAFGSGSGLGFSSDVDSFPTKSKGRPTSSATAPPKGLGMKLGKSQKTKQFLESLKAEGEVFLEDVQPKPGLSQAAAPPPTDPITLTVEEKLNVTLKRDGGIGNFDVQGTMSLQILSKEDGHIQVQVQTGDNQAIIFKTHPNMNKDLFSNENILGLKDPNRPFPTGQTGGSEGVGLLKWRMQSTDESMVPLTINCWPSTSGNNTYVSIEYEASSMFDLRDVMISVPLPSLREAPSVNQIDGEWRYDSRNSLLEWTILMIDNSNRSGSMEFVVPQADPSAFFPIYIHFTATDTFSKLKVTNTIPLKGGNPPKFFQRTQLITENYMVV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02470 530 MobiDBLite consensus disorder prediction 158 177 - -
Viun11g02470 530 FunFam Coatomer subunit delta 397 492 - -
Viun11g02470 530 MobiDBLite consensus disorder prediction 158 189 - -
Viun11g02470 530 MobiDBLite consensus disorder prediction 221 249 - -
Viun11g02470 530 FunFam Coatomer subunit delta 288 396 - -
Viun11g02470 530 Pfam Adaptor complexes medium subunit family 285 504 IPR028565 -
Viun11g02470 530 CDD Delta_COP_N 4 133 - -
Viun11g02470 530 FunFam Coatomer subunit delta 3 141 - -
Viun11g02470 530 CDD AP_delta-COPI_MHD 286 527 - -
Viun11g02470 530 Gene3D Mu homology domain, subdomain B 393 492 - -
Viun11g02470 530 PANTHER COATOMER SUBUNIT DELTA 1 530 IPR027059 GO:0006890|GO:0030126
Viun11g02470 530 SUPERFAMILY SNARE-like 5 142 IPR011012 -
Viun11g02470 530 Gene3D - 3 141 - -
Viun11g02470 530 Gene3D Mu homology domain, subdomain B 288 504 - -
Viun11g02470 530 ProSiteProfiles Mu homology domain (MHD) profile. 285 530 IPR028565 -
Viun11g02470 530 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 285 527 IPR036168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02470 Viun-Chr11 38241888 38248346 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02470 K20471 - gmx:100780122 893.649