Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02468 ATGTCCGGGCCTCTCGACCGTTTCGCCAGACCATGTTTCGAAGGTTTCTCCGGGAGCGACGAGAAGAAGGAGCGGAGATCTGATTTTGAGAACTCCGAGGACGAACGGAGGACCAGAATCGGATCTCTCAAGAAGAAGGCGCTGAATGCGTCGTCCAAGTTCAAGCACACGCTGAAGAAGAAGAGCAGCAGAAGGAAGAGCGATGGCCGTGTCAGCTCTGTTTCCATTGAGGATGTTCGGAATTTCGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAGTCCTTGATCATCGACGAAATGCTCCCCGAAAAACACGATGATTACCATGTCATGTTAAGGTTTCTGAAAGCGAGGAAGTTTGATGTTGAAAGGGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTGCTGACACTATCATGGAGGATTTTGAGTTCGTAGAATTAAATGAAGTTATGAAGTATTATCCGCATGGTCATCACGGTGTTGATAGGGAGGGAAGGCCTGTCTACATTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACAACCATGGATAGATATGTGAAATACCATGTGCGGGAATTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACAATTGCCGCCAAAAGGCACATAGATTCAAGCACCACGATATTAGATGTTCAAGGAGTGGGCCTCAAGAACTTTACAAAGTCTGCCCGGGAACTAATTTTGCGGTTACAAAAGATTGATGGTGACAACTACCCTGAGACTCTTTGTCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGGTTACTGTGGAACACCGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATCCATGTTCTTGGAAATAAGTATCAAAGCAAATTGCTGGAAGTAATTGATTCCAGCGAGTTGCCGGAATTTCTGGGAGGTACATGTACATGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCGGAAATTTTGAAGATGATTCTTAGTGGTGAAGCACGAAGAGCAAGGCCCGTTGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAGACCACAATACCCAATGGTAAAAGGTAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATTGCTTCTCCAAAAGCGATGAAGAGCTACTCTCACCTTAGGTTGACACCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCAATCTATGTTGGTGGTGGTAACTTGGCTGGGTATGATGAATATGTTCCGATGGTGGACAAAGCTGTTGATGCTAGCTGGAACAAACAAGCATCACTCCAGAGGGCTCAAACTTCAAAAGGAACACCTTCCCTCCCTGATCCTCCACAGACTCCCATAGGAATTCCAGCTCGGATGTTGGGGGCTCTAACTGCTTTCTTTATGATGCTGTTTACCCTCTTCCATTCAGTCGCATACCGTGTGACCAAGAAACTTCCAGCCTCATCATCTAATGACGATCAGTGCACTTCAGAGACACCCGTTAGTACAACAAGCGAAGACAATCATCCTCCGTCACCAACTCCAGAAGACAGAGAGGCAAATCTCCTTTCCTCAATGGTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGTGGAATTGCTAAATGCTGCTGTATGTCGAGTGGATGCTTTGGAAGCAGAGCTAATTGCAACCAAAAAGGCTCTGTATGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGATGCTAAGTCGCGGAAGAAGTTTTGCTGGTGA 1881 0.454 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLKKKSSRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQSLIIDEMLPEKHDDYHVMLRFLKARKFDVERAKHMWADMLQWRKEFGADTIMEDFEFVELNEVMKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVREFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELILRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDSSELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYARPQYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKSIYVGGGNLAGYDEYVPMVDKAVDASWNKQASLQRAQTSKGTPSLPDPPQTPIGIPARMLGALTAFFMMLFTLFHSVAYRVTKKLPASSSNDDQCTSETPVSTTSEDNHPPSPTPEDREANLLSSMVKRLGELEEKVDTLQSKPSEMPYEKVELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEDAKSRKKFCW 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02468 626 SMART sec14_4 152 323 IPR001251 -
Viun11g02468 626 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Viun11g02468 626 Gene3D - 76 139 - -
Viun11g02468 626 Gene3D - 140 350 IPR036865 -
Viun11g02468 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Viun11g02468 626 Coils Coil 545 565 - -
Viun11g02468 626 MobiDBLite consensus disorder prediction 508 532 - -
Viun11g02468 626 MobiDBLite consensus disorder prediction 452 466 - -
Viun11g02468 626 FunFam SEC14 cytosolic factor 140 352 - -
Viun11g02468 626 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Viun11g02468 626 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Viun11g02468 626 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Viun11g02468 626 MobiDBLite consensus disorder prediction 1 70 - -
Viun11g02468 626 CDD SEC14 152 321 IPR001251 -
Viun11g02468 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 615 - -
Viun11g02468 626 MobiDBLite consensus disorder prediction 508 541 - -
Viun11g02468 626 MobiDBLite consensus disorder prediction 452 472 - -
Viun11g02468 626 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Viun11g02468 626 MobiDBLite consensus disorder prediction 16 42 - -
Viun11g02468 626 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Viun11g02468 626 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Viun11g02468 626 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Viun11g02468 626 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02468 Viun-Chr11 38202241 38207440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02468 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 27.126 7.61e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02468 K26544 - gmx:100785793 1110.13