Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02465 ATGGCAAGTGATTCTTTTGTGATTTCCAATGGCAATGGCAATGGCAAGTCAGAGCCTCCTCGACAGAGGACTTACCAAGCAGTAGTGATTGCCACCAGAGATATGGGCATTTCTAAGGATGGAAAATTGCCCTGGACGTTACCCACTGATCTCAAATTTTTTGATGAGGTCACTACTATAACGTCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGAATAGGCCTCTTCCTGGTCGCCTTAACGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACTGCAGAGAATGTTGTAATATGTGGAAGTGTGTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATATTCAGAGAGGCTCTTAATGCACCTGGATGCGAAGCTGCTCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCTCTCTATTTCAGCCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGTGCGTGTAAGGAGTTCTCCGGCTGAGTCCCTAGGTCAGAATGCTGATCCAGTTTTTGATAATGGTTCAGACTCTTTAAAATTTGAGGTCAATAAATTTTCTTTTCTTCCAAAATTCATTTATGAGAGACATGAGGAGTTTAAGTATCTAAGTTTGGTTCGAGAAATTATTTCTGAAGGCACAATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTAACAACCAAGAAAGTGTTTTGGCGAGGGGTTGTTGAGGAGCTTCTTTGGTTTATCAGCGGCTCAACAAGTGCCAAGGTGCTGCAAGAAAAAGGCATTCATATCTGGGATGGCAATGCATCTAGAGAATACCTTGATAGCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGACCAGCTTCTGGATGTTATTAACAAGATAAAGCATAACCCTGATGATCGACGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCCCCCTGCCACATGTTTGCCCAGTTTTACGTAGCAAGTGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTATTCCGGGTGATTTTAGTCATGTTATCGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCCTTTGTTGCTGCCGATTTCAAGCTCATAGGATATGACCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1587 0.4348 MASDSFVISNGNGNGKSEPPRQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEVTTITSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTSLFQPWYSSFPLVEDNLRYSFTTYVRVRSSPAESLGQNADPVFDNGSDSLKFEVNKFSFLPKFIYERHEEFKYLSLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVASGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFSHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02465 528 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Viun11g02465 528 ProSitePatterns Thymidylate synthase active site. 390 418 IPR020940 GO:0004799|GO:0006231
Viun11g02465 528 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 9 202 - -
Viun11g02465 528 Gene3D Dihydrofolate Reductase, subunit A 5 203 IPR024072 -
Viun11g02465 528 CDD DHFR 27 200 IPR001796 GO:0004146|GO:0046654
Viun11g02465 528 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 234 528 IPR036926 -
Viun11g02465 528 CDD TS_Pyrimidine_HMase 248 481 IPR023451 -
Viun11g02465 528 MobiDBLite consensus disorder prediction 1 21 - -
Viun11g02465 528 PANTHER THYMIDYLATE SYNTHASE 1 47 528 IPR045097 GO:0016741
Viun11g02465 528 SUPERFAMILY Dihydrofolate reductase-like 25 201 IPR024072 -
Viun11g02465 528 PIRSF DHFR-TS 8 528 IPR012262 GO:0004146|GO:0004799|GO:0006730
Viun11g02465 528 FunFam Possible thymidylate synthase 239 528 - -
Viun11g02465 528 Pfam Thymidylate synthase 247 528 IPR023451 -
Viun11g02465 528 NCBIfam thymidylate synthase 247 528 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 PRINTS Thymidylate synthase family signature 423 449 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 PRINTS Thymidylate synthase family signature 461 478 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 PRINTS Thymidylate synthase family signature 379 398 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 PRINTS Thymidylate synthase family signature 405 420 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 Hamap Thymidylate synthase [thyA]. 245 528 IPR000398 GO:0004799|GO:0006231
Viun11g02465 528 MobiDBLite consensus disorder prediction 1 23 - -
Viun11g02465 528 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 237 528 IPR036926 -
Viun11g02465 528 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02465 Viun-Chr11 38186026 38190498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02465 K13998 - gmx:100786311 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02465 11 38186026 38190498 Viun11g02465 11 38186026 38190498 ECH