Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02421 ATGGCGCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAATATTCTCCCTTTGCGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAATTAGATGCCAGGAGATGTTCGCAGGTTATCACGAAACTTTTATACTTACTAAACCAAGGAGAGACATTTACAAAGGTAGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTTCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATAATAAAGGAGCTTTCCCCCTCAGCGGATGAGGTTATTATCGTTACAAGCTCCCTCATGAAGGACATGATTAGTAAGACTGATATGTACAGGGCTAATTCTATTCGTGTCCTTTGTCGCATCACAGATGGAACACTCCTCACCCAAATAGAGCGATATCTGAAACAAGGAATTGTGGATAAGAATCCAGTTGTTGCAAGTGCAGCCTTAGTTAGCGGCATTCATCTGCTTCAGACATCTCCAGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCAGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCCCTGGCTTTGCTCCATCAGATACGGCAGAATGATCGACTAGCTGTTAGCAAACTGGTTACCAGCTTGACCAGGGGAAATGTTCGTTCTCCTTTGGCCCAATGCCTTTTGATCCGCTATACAAGTCAGGTAATCCGGGAAGGAAATATCACACAATCAGGAGACCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCAGCCAGGGCAATTACGGAGCTCAATGGAGTAACTAGCCGAGAATTAACTCCTGCAATTACAGTTCTTCAGCTCTTCTTAAGTTCGTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGTACCTTAAACAAGGTGGCAATGACACATCCAATGGCAGTGACTAACTGCAATATTGACATGGAAAGTTTGATCTCTGACCAGAACAGAAGCATTGCAACACTTGCCATCACTACTCTATTGAAGACAGGAAATGAATCTAGTGTGGACCGACTTATGAAGCAGATTACGAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCTTAAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAATATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATCAGAGATATCCCTGAGGCCAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATTCTGCACTTCCTGGGAGTTGAAGGGCCAAAAACATCCGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTTAGGGCCAGTGCTGTTAGCACAATGGCAAAGTTTGGGGCTTCTGTTGATGCATTAAAGCCTCGCATATTTGTACTGCTAAGGCGATGTCTTTTTGACAGCGATGATGAGGTCCGTGACAGAGCAACACTTTATTTGAACACCCTTGGAGGTGATGGTGGAGTGGTTGAGACAGATGAAGATGTGAAAGATTTCCTCTTTGGGTCATTTGATATCCCACTTGCCAATCTGGAGACTACTTTGAAAAACTATGAGCCTTCAGAAGAGGCTTTTGACATTGGTTCAGTGCCCAGGGAGGTTAAATCTCAACCTCTTGCAGAGAAGAAGGCCTCTAGTAAAAAGCCTACCGGTTTGGGTGCTCCTCCTCGTGGTCCCTCATCTACTACAGCAGATTCTTATGAAAGGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAACTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAGGCGGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGCCATGTCGTGTTTCAATACAACTGCACAAACACGATACCAGAACAATTATTGGAAGATGTTATTGTGATTGTGGATGCTTCTGAAGCAGAAGAGTTCTCTGATGTGTGCTCAAAACCTCTTAGATCTCTTCCTTATGATTCACCTGGCCAGACATTTGTGGCTTTTGAGAAGCCTGAGGGATTACCAGTTGCTGGAAAATTTTCTAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAGCCACTGGTGAGGCAGAAGATGATGGTGTGGAGGATGAATACCAGCTAGAGGATTTGGAGGTTGTCACAGCAGACTACATACTGAAAGTGGGGGTCTCTAATTTCAGGAGTGCATGGGAAAGCATGGGCCCTGAAAATGAGCGGGTGGACGAATATGGTCTTGGTCCCAGGGAGAGTTTGGCTGAAGCTGTAAATACCGTCATCAATCTTCTTGGTATGCAGCCTTGTGAGGGAACCGAGGTAGTGGCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCGAAGGATGTTGCGATGAAACTGTCTGTCAGATCCGAGGATGAAACTGTCAGCGACACCATCCATGAGATTGTGGCTAGCGGCTAG 2664 0.4362 MAQPLVKKDDDRDDEAEYSPFAGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMISKTDMYRANSIRVLCRITDGTLLTQIERYLKQGIVDKNPVVASAALVSGIHLLQTSPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLIRYTSQVIREGNITQSGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTMAKFGASVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGGVVETDEDVKDFLFGSFDIPLANLETTLKNYEPSEEAFDIGSVPREVKSQPLAEKKASSKKPTGLGAPPRGPSSTTADSYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDSHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSDVCSKPLRSLPYDSPGQTFVAFEKPEGLPVAGKFSNVLKFIVKEVDPATGEAEDDGVEDEYQLEDLEVVTADYILKVGVSNFRSAWESMGPENERVDEYGLGPRESLAEAVNTVINLLGMQPCEGTEVVAPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDTIHEIVASG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02421 887 FunFam Coatomer subunit gamma 615 768 - -
Viun11g02421 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Viun11g02421 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Viun11g02421 887 Gene3D - 334 545 IPR011989 -
Viun11g02421 887 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Viun11g02421 887 PIRSF Gamma-COP 7 885 IPR017106 -
Viun11g02421 887 MobiDBLite consensus disorder prediction 590 620 - -
Viun11g02421 887 FunFam Coatomer subunit gamma 769 885 - -
Viun11g02421 887 Pfam Adaptin N terminal region 29 539 IPR002553 GO:0006886|GO:0016192|GO:0030117
Viun11g02421 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Viun11g02421 887 Gene3D - 23 315 IPR011989 -
Viun11g02421 887 FunFam Coatomer subunit gamma 23 315 - -
Viun11g02421 887 FunFam Coatomer subunit gamma 332 540 - -
Viun11g02421 887 SUPERFAMILY ARM repeat 27 560 IPR016024 -
Viun11g02421 887 SUPERFAMILY Clathrin adaptor appendage domain 616 771 IPR013041 -
Viun11g02421 887 Gene3D Coatomer, gamma subunit, appendage domain 614 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Viun11g02421 887 Gene3D - 769 885 IPR012295 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02421 Viun-Chr11 37996251 38004382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02421 K17267 - gmx:100789362 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02421 11 37996251 38004382 Viun11g02421 11 37996251 38004382 ECH