Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02419 ATGGAGGAGAAACGCCGCGAACCTGCTCCCTCCGCCGCAGATTCCCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGTGCCGGGGCCAACAAGCGCAAGTCCGCTGCTCTCAACGCCTCCGGTTCCTCTTCCGCCCCCTCTAAACGCGCCGCTCGCGACAAGGCCTCGCCGCTCCACCCTCCTCCCCTCCACAATGGCCCCCTCACCCGGGCCCGCCAAACCCCCAACTCCCTCGCCGCCGCTTCCTCGTCCGCCGCTGCTTCCGCTCCCGCCGCCGTCAAACACTCCGAACGCACCCATCCCTCCGCTGCAGACTCCGCCGCGCTCGCCGAGCAGCTGAGGAAGGAGAGCGAGTGGGAGACTCTGGAGGCCGCGATTGAAGCGGAATTCGAAGCCCTCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTTGTATATTCATGAAATTGAGAAGCAAATGTTACCTTCTTTCTTTAATGGAAAAACTGAAAATCGGACGCCTGATGTATACATGGAGATACGAAATTGGATAATGAAGAAGTTTCATTCAAATCCAAATGTGCAAATTGAAATGAAAGATATGTCACAGCTTAATGTTGGAGACATGGATGCTAGGCAAGAGGTAATGGAGTTTCTGGATTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTGTGGCCACTGCCAGTGATGATGGAGAAGCAGAAAAGAGTTCTTTGCTTGAAAAATTGTATCACTTTGAAACTCTGCAATTATGTCGACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACAGCCTCTGGCTTGTTTCCAGAGTCTACTATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCTGTTGAGATGCTTGAGTACCATTGCAATTCATGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAAGAGACCCTTCTGCTACTTGAAGCCTTAGAACTTTATAAAGAAAATTGGAATGAAATTGCTGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATCGTACTTTGTTCAAATGCCAATTGAGGATACCTTTGCTGAATTTGATGATAATATTGATGCTGGTTGCAAAGAACCAACAGATCCAGTTGCAACAAACAATGACTCATCTATGGACAAGGATGCTTCAGAGTGTATTGAGAATGATACTAGTGATGGCATCAAAGACCAGGATAAAAATTCCAAGGCTGAGGACGTTGAAGTGAAGGTGAATCAGGAGGAGAATCTAAAGTTACAAGAAGGTAGTGATGAGAAAGCCAGTGAGGGAACTTCCAAATCTGAAGATGCTGTTAAGGTGAAGTCTGATCAGGAAGCAGGCAATGAATGTGCTATAAATGCTCTCAAGGAAGCATTTGCTGCTGTTGGTTATTCTCTTGGACCTGATGGACCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACGTTCCTTGCACACTTGGTGGGTACTGATGTGGCTGTTGCTTCAGCTCATAGTTCCATAAAATCCATGTCAAGAAATTCTCCTGGCACTGACCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGATCATAAGAATGAACCAACTAGTTCTGAGAAGGATTCTAAAAGTGAGGGAGATCAGGATGAAGTAAATGTAAAGAAGGACAAACCAATGTTGGATGATAAAGATTTACCGAATGATCACAGTAATATGAAAGTTGTAAGTGACACTTTAGAAGACAAGGGACAGGCGGCTTCCACAGATGGTGCAGCCTCAGCAGAAAAGCCAATTTCTCCGAAGGAGCAACCAATGGTTAATCATGAAAGTGGGCTTGACAATTGTAATGTTCCTATCAGTGCAAAGCTATCCAATGATCAAGCACCAGACACTCTGCATGATTCAGGTGGTTCAACATCCAAGGCTGAAACTAAATCTAATTCTGACCAGGTTCAGGAGGGATCCTTAATTGAAGAACCTTGTCCTGCAAAGGTCATATCTGTGTCTGATTCTCTTCCATCAGAGAAGAAAGAACTTCAGCCACTTAAATCCAATTTACCAGAAGAGTCTCCAAAGCTAGTAGAGACATCAAAATGTGAGATAGTCTCTGACTCTATTCCCCCAACTAAGAACAAGTCTCAAAATCCACAATCTACAAATCCAGTTTGTGAATCTGTAGAAACAACAGACTCAGCCATGGATGTTGAAGGAGTTTCTAATTCCTTGCCGCCAGAAAAGGTTGACTCTCAGGCACTATTAACAACAAAATCATCCCAATGTAATGGGACAGAAAAGGATGTAGATATGTCACCATCAGATCCAGTTAGACAAAATTCTGCTGCTGAAAATTGTGCAAATACAGGGACAGGTAAAGATCATGCGGATAATGGAGCAAAAGTGGAAGATAACGATACAAGGATTAAACAGGACAGCAATTTTGAGAAAATGAAACGGGCTGCAGTTTCTACACTTGCTGCAGCCGCAGTAAAAGCAAAAGTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTGATAGAAAAACAGTTGCTCAAGTTGGAAACTAAGTTGGCTTTTTTCAATGATGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCGAGGCATAAGCTTTATCACGAGCGTGCGTTGATTATTGCATCGCGGCTTGGTATACCAGCTTCGTCCTCTAGAGGTATACCACCAACTATATCAACTAATAGAATTCCTACAAATATTGCGAACTCACTCCCAAGACCACAAATGATGATGAGTCCACAAAGGCCACTTCTTTCTAGACCTGCAGCCACTGCAGCTACAACTCTTCAAAACCCATTAGCATCTTCAACTGCGGTAGGAAATTCCGTTCGGCCATCTAACCAGGAAAAACTTTCTTCTGTTGGGACAAAATAA 3111 0.4516 MEEKRREPAPSAADSPASEPASSRRRAGANKRKSAALNASGSSSAPSKRAARDKASPLHPPPLHNGPLTRARQTPNSLAAASSSAAASAPAAVKHSERTHPSAADSAALAEQLRKESEWETLEAAIEAEFEALRSRGANAHVVPTHCGWFSWLYIHEIEKQMLPSFFNGKTENRTPDVYMEIRNWIMKKFHSNPNVQIEMKDMSQLNVGDMDARQEVMEFLDYWGLINFHPFPSMDSAVATASDDGEAEKSSLLEKLYHFETLQLCRPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCISYFVQMPIEDTFAEFDDNIDAGCKEPTDPVATNNDSSMDKDASECIENDTSDGIKDQDKNSKAEDVEVKVNQEENLKLQEGSDEKASEGTSKSEDAVKVKSDQEAGNECAINALKEAFAAVGYSLGPDGPSSFAEVGNPVMALATFLAHLVGTDVAVASAHSSIKSMSRNSPGTDLAARCCFLLEDPPDHKNEPTSSEKDSKSEGDQDEVNVKKDKPMLDDKDLPNDHSNMKVVSDTLEDKGQAASTDGAASAEKPISPKEQPMVNHESGLDNCNVPISAKLSNDQAPDTLHDSGGSTSKAETKSNSDQVQEGSLIEEPCPAKVISVSDSLPSEKKELQPLKSNLPEESPKLVETSKCEIVSDSIPPTKNKSQNPQSTNPVCESVETTDSAMDVEGVSNSLPPEKVDSQALLTTKSSQCNGTEKDVDMSPSDPVRQNSAAENCANTGTGKDHADNGAKVEDNDTRIKQDSNFEKMKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSLLIEKQLLKLETKLAFFNDVENVVMRAREHVERSRHKLYHERALIIASRLGIPASSSRGIPPTISTNRIPTNIANSLPRPQMMMSPQRPLLSRPAATAATTLQNPLASSTAVGNSVRPSNQEKLSSVGTK 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02419 1036 MobiDBLite consensus disorder prediction 585 784 - -
Viun11g02419 1036 CDD ZZ_RSC8 306 350 IPR041984 -
Viun11g02419 1036 ProSiteProfiles SANT domain profile. 364 411 IPR017884 -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 817 858 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 668 713 - -
Viun11g02419 1036 CDD SANT 381 406 IPR001005 -
Viun11g02419 1036 ProSiteProfiles Zinc finger ZZ-type profile. 303 357 IPR000433 GO:0008270
Viun11g02419 1036 FunFam SWI/SNF complex subunit SMARCC2 isoform C 361 411 - -
Viun11g02419 1036 SUPERFAMILY Homeodomain-like 360 411 IPR009057 -
Viun11g02419 1036 ProSiteProfiles SWIRM domain profile. 141 238 IPR007526 GO:0005515
Viun11g02419 1036 MobiDBLite consensus disorder prediction 69 84 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 1000 1036 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 35 49 - -
Viun11g02419 1036 Pfam SWIRM domain 144 229 IPR007526 GO:0005515
Viun11g02419 1036 Gene3D - 300 349 IPR043145 -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 964 988 - -
Viun11g02419 1036 PANTHER SWI/SNF COMPLEX-RELATED 767 955 - -
Viun11g02419 1036 Pfam Myb-like DNA-binding domain 363 405 IPR001005 -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 423 504 - -
Viun11g02419 1036 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 399 IPR017930 -
Viun11g02419 1036 Gene3D - 147 232 IPR036388 -
Viun11g02419 1036 ProSiteProfiles Myb-like domain profile. 357 407 IPR001005 -
Viun11g02419 1036 SMART zz_5 302 346 IPR000433 GO:0008270
Viun11g02419 1036 SUPERFAMILY RING/U-box 298 351 - -
Viun11g02419 1036 Gene3D - 360 411 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 761 784 - -
Viun11g02419 1036 Pfam SWIRM-associated region 1 882 959 IPR032451 -
Viun11g02419 1036 SMART sant 361 409 IPR001005 -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 585 635 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 817 849 - -
Viun11g02419 1036 Pfam Zinc finger, ZZ type 305 340 IPR000433 GO:0008270
Viun11g02419 1036 SUPERFAMILY Homeodomain-like 148 230 IPR009057 -
Viun11g02419 1036 ProSitePatterns Zinc finger ZZ-type signature. 308 334 IPR000433 GO:0008270
Viun11g02419 1036 MobiDBLite consensus disorder prediction 1 109 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 963 1036 - -
Viun11g02419 1036 MobiDBLite consensus disorder prediction 440 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02419 Viun-Chr11 37980174 37986061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02419 306 403 EF-hand Containing Proteins AT3G07740 36.207 6.69e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02419 K11649 - gmx:100799723 1610.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02419 11 37980174 37986061 Viun11g02419 11 37980174 37986061 ECH