Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02411 ATGGTTCCTCAAGCTTTGTCAGTGCCCGCTAGCGCCAGCTTCGCTATAGCTTCTCGCTCCAGAACTCCCTCCCACGTTGTATTTTCTCACAGAAACCCTTGTTCGGTAGCTTCTTCTTTTCCAAGCCCATATGGCAATTCATCAGAAGTTGGGTTATCAAGTAAAAGCGGGGGCTTTCCTTTAAAATTTGATGAGAAAAATATCCATGGTGCAAGCACAAGTTATGGTGCAATTGAGGCCAAGAAGGGGAATCCATCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTGCAATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTTGCTACTATTGATGAAAAATCAGATATACTGGTATATATAAATTGCCCTGGTGGAAGCACGTATTCAGTATTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGAGAGAAGGGAATGCGCTATGCAATGCCAAATGCTCGCATTATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTTACGGGGCAGCCATTAGAGAAGGTGCAGCAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 825 0.4461 MVPQALSVPASASFAIASRSRTPSHVVFSHRNPCSVASSFPSPYGNSSEVGLSSKSGGFPLKFDEKNIHGASTSYGAIEAKKGNPSITPAVMTPGGPLDLQSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDEKSDILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02411 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Viun11g02411 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 85 273 IPR023562 -
Viun11g02411 274 Pfam Clp protease 99 272 IPR023562 -
Viun11g02411 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Viun11g02411 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 83 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 Gene3D - 78 274 - -
Viun11g02411 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Viun11g02411 274 FunFam ATP-dependent Clp protease proteolytic subunit 79 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02411 Viun-Chr11 37911375 37914820 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02411 K01358 - gmx:100799710 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02411 11 37911375 37914820 Viun11g02411 11 37911375 37914820 ECH