Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02335 ATGACGCCTCAGAAGAACGTGGTTGAGCCTCTAGTGAGTGCAATAAAATCTTCAGCCCAAAAAAATGCTGCGAGTTTTCACTTTCCTGGGCACAACAGAGGGAACGCTGCACCTGCTTCCATGACTGGACTTATCGGAAGAACAGCCTTTGTTCATGACTTGACTGTGCTTCATGAGCTTGGCAATCTCTTTTGTCCCTACGGTCCCATACTAGAAGCACAGGTTGAAGCAGCAAAACTGTTCGGATCTTCACACACATGGTTTCTTGTCGGAGGTACAACATGTGGAATCCAAGCAGCCATAATGTCGACATGTTCTCCGGGGCAAGTTCTCATTCTTCCTAGGAATTCTCATATATCAGCCATATCTGCATTGGTATTGTCTGGTGCAGTGCCTAAGTACATCATTCCTCACTTTCTCGATCATTGGGACGTTGCTGCTGCTATCACCCCATCTCAGGTATCGAAAGCCATCCAGGAGCTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTGTTCATCACTTCACCAACTTATCATGGTCTTTGCAGTGACTTGACCACCATTTCTGAGCTCTGTCACTCTCATAAAATCCCTTTGATCGTGGACGAAGCTCATGGCGCACACTTTGGATTTCATTCAAAACTACCCAAATCAGCTCTCCACCAAGGTGCTGATCTTATCGTGCAGTCCACTCACAAAGTTCTATGCTCTCTTACTCAGTCATCCATGCTGCACATGTCAGGCAACATTGTAGACAAGGACAAAGTTTCTAGGTGTCTCCGAACTCTCCAAACCACAAGCCCTAGTTTTCTGCTTCTGGCATCCCTTGACGCTGCCAGAGCTCAAATCAGTGAGAACCCTGATTCTGTATTCAACCGAGCAATTGCATTAGCCGATGAAGCAAAGCGTGTGCTAAAACAAATCCCTGGAATCTCAGTACTTGAGAGTTCAAGCTTTCCAGCATCTCCCGCAGTTGATCCATTGCGTCTCACTGTAGGGTTTTGGAATCTTGGATTATCAGGTTCCGAAGCAGACGAAATCTTATACAAGGATTACGAAGTCATCTGTGAACTCATTGGGAATAGATCTATTACTTACGTGCTTAATCTTGGGACTTGCAGGGAGCATGTCCACAGGCTTGTGTTGGGTATAAAGCGTTTGGCTGCAACACATGGTTCCATTTCAAAACCTGAGAAGAAAATGGTGAATAATGTTCATGCACCCTTTGATGATATAACGATGAGTATGATCCCCAGAGATGCGTTTTTTGCAAGTAAAAGGAAAGTGGCAATAAGAGAGAGCATTGGTGAGGTTGCAGGGGAGCTTATATGTCCGTACCCTCCTGGTGTACCAGTGTTGATCCCTGGTGAGGTTGTAACTGAAAAGATTGTTGATTATCTGCTTCATGTTACGAGTAAAGGAGCTGAAGTTAATGGAGCATCTGATTCCTCGCTTTCTTCGATACTTGTTTGCGGTAAATTATGA 1485 0.4498 MTPQKNVVEPLVSAIKSSAQKNAASFHFPGHNRGNAAPASMTGLIGRTAFVHDLTVLHELGNLFCPYGPILEAQVEAAKLFGSSHTWFLVGGTTCGIQAAIMSTCSPGQVLILPRNSHISAISALVLSGAVPKYIIPHFLDHWDVAAAITPSQVSKAIQELEMEGKKAAAVFITSPTYHGLCSDLTTISELCHSHKIPLIVDEAHGAHFGFHSKLPKSALHQGADLIVQSTHKVLCSLTQSSMLHMSGNIVDKDKVSRCLRTLQTTSPSFLLLASLDAARAQISENPDSVFNRAIALADEAKRVLKQIPGISVLESSSFPASPAVDPLRLTVGFWNLGLSGSEADEILYKDYEVICELIGNRSITYVLNLGTCREHVHRLVLGIKRLAATHGSISKPEKKMVNNVHAPFDDITMSMIPRDAFFASKRKVAIRESIGEVAGELICPYPPGVPVLIPGEVVTEKIVDYLLHVTSKGAEVNGASDSSLSSILVCGKL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02335 494 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 411 474 IPR008286 GO:0003824
Viun11g02335 494 Gene3D - 9 289 IPR015421 GO:0003824
Viun11g02335 494 Gene3D - 391 487 - -
Viun11g02335 494 Pfam Orn/Lys/Arg decarboxylase, major domain 10 308 IPR000310 GO:0003824
Viun11g02335 494 SUPERFAMILY PLP-dependent transferases 10 387 IPR015424 -
Viun11g02335 494 CDD Orn_deC_like 10 307 IPR000310 GO:0003824
Viun11g02335 494 SUPERFAMILY Ornithine decarboxylase C-terminal domain 347 492 IPR036633 GO:0003824
Viun11g02335 494 PANTHER ARGININE DECARBOXYLASE 7 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02335 Viun-Chr11 37559219 37562117 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02335 - - gmx:100819143 768.844