Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02333 ATGAACAAGGTTGCAGGGTTTGTGACAACCTTATTCATGATGGTGATGCTGATGGTGCCAAAAACCGCGAGTGCCGAAAACATAGACAGAATCGTGACACCACAATTCTTCGACATGATAATCAACCAGGCCGATGGTGATTGTGCAGGGAAGAACTTCTACTCACGTGACGCTTTCCTCAAAGCTCACAGGTCCTACCCTCGATTTGGTGCTCTTAATAACGAAGATGATTCCAAACGTGAAATTGCAGCTGCTTTTGCTCATTTCACCCACGAAACTGGACATTTTTGCTACATAGAAGAGATTGGAGGAGCGTCAAGGGACTACTGTGATGAAAGCAACACTGAGTTTCCATGTGTACCTTACAAAGGGTACTATGGTCGTGGACCTATCCAACTGTCGTGGAACTTCAACTATGGACCAGCAGGACAGAACATTGGTTTCGATGGGTTGAATGCTCCGGAGACAGTGGCCAATGACCCTGTCGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAGTTTGTGCGCCCTGTCATGAACGAGGGCTTTGGTGCAACCATTAGAGCCATCAATGGCCAACTTGAATGTAATGAAGGAAACCCTGACACTGTCCGTGCTCGTGTTTATTATTACACCAAGTATTGTTCTCAATTTGGTGTTGCTCCTGGTGACAATCTTACTTTTGTAACTAATCAAACCCTTTGTGACTTAAAATTGATTAATGTGAAGCTTTTAATAAAGCATGCTACAAATAGAAGTGAGTGTGGTCTGAATTGCCAACATTCTCTATTGAAAAAAGTGATAACACAGTTTGACAGAATTCTCCACCAGGCGATGTGGAACAACAAGGTGCAAAACATGAACAGTGTAGTAAAGAGAGTGATGGTGAGTTTGTTAGTGTTGATGCAAGGTGCTTGCTATGGCAGTGAGAAAGCGAGCCATGTTTCTGTGGCTGACATTGTCACAACCGAATTCTTCAACTCCATACTTGACGAAGGTGATGATGAAGCAGATTGTGCAGGCAAGAACTTCTACTCTCGACAAGCCTTCCTGCATGCTCTCAATTCCTACAAACAGTTTGGTCGAACTGGTTCTGCAGATGACTCCAAACGTGAAATTGCTGCTGCTTTTGCTCATTTCACACAAGAAACTCAACATTTTTGCTACGTAGAAGAGACTGAAGGTGAATCAAAGGACTATTGTGATGACAGCAACAGCGAGTACCCGTGTGCCTCTGACAAGGAGTACTACGGGCGTGGACCGATTCAACTGAGGTGGAACTACAACTATGGAGCAGCAGGGGAAAGCATTGGTTTTGACGGGTTGAAGGCTCCGGAGACGGTGGCCAATGACCCTGTGGTGTCGTTCAAGACAGCACTGTGGTTCTGGACACAGAATGTGAGCCCTGTGATGGAGCAGGGGTTTGGTGAAACCATTAGAGCCATGAAAGGTGAAGCTGAATGTGATGGAGGAAACCCTGATGCTGTTCAGGCTCGTGTTGATTACTACACACAATACTGTTCACAGCTTGGTGTTGCTCCTGGTGATAACCTCACTTGCTAA 1566 0.4547 MNKVAGFVTTLFMMVMLMVPKTASAENIDRIVTPQFFDMIINQADGDCAGKNFYSRDAFLKAHRSYPRFGALNNEDDSKREIAAAFAHFTHETGHFCYIEEIGGASRDYCDESNTEFPCVPYKGYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPETVANDPVVSFKTALWYWMEFVRPVMNEGFGATIRAINGQLECNEGNPDTVRARVYYYTKYCSQFGVAPGDNLTFVTNQTLCDLKLINVKLLIKHATNRSECGLNCQHSLLKKVITQFDRILHQAMWNNKVQNMNSVVKRVMVSLLVLMQGACYGSEKASHVSVADIVTTEFFNSILDEGDDEADCAGKNFYSRQAFLHALNSYKQFGRTGSADDSKREIAAAFAHFTQETQHFCYVEETEGESKDYCDDSNSEYPCASDKEYYGRGPIQLRWNYNYGAAGESIGFDGLKAPETVANDPVVSFKTALWFWTQNVSPVMEQGFGETIRAMKGEAECDGGNPDAVQARVDYYTQYCSQLGVAPGDNLTC 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02333 521 Gene3D Endochitinase, domain 2 392 449 - -
Viun11g02333 521 FunFam Endochitinase PR4 16 108 - -
Viun11g02333 521 ProSitePatterns Chitinases family 19 signature 1. 48 70 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 FunFam Endochitinase PR4 312 400 - -
Viun11g02333 521 ProSitePatterns Chitinases family 19 signature 1. 340 362 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 ProSitePatterns Chitinases family 19 signature 2. 163 173 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 FunFam Endochitinase (Chitinase) 392 451 - -
Viun11g02333 521 CDD chitinase_GH19 32 228 - -
Viun11g02333 521 SUPERFAMILY Lysozyme-like 28 229 IPR023346 -
Viun11g02333 521 Gene3D Endochitinase, domain 2 102 157 - -
Viun11g02333 521 PANTHER CHITINASE-RELATED 24 229 - -
Viun11g02333 521 SUPERFAMILY Lysozyme-like 317 521 IPR023346 -
Viun11g02333 521 Pfam Chitinase class I 321 469 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 Pfam Chitinase class I 32 174 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 Pfam Chitinase class I 473 521 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 Pfam Chitinase class I 182 227 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun11g02333 521 Gene3D - 316 521 - -
Viun11g02333 521 FunFam Endochitinase (Chitinase) 100 159 - -
Viun11g02333 521 CDD chitinase_GH19 322 521 - -
Viun11g02333 521 Gene3D - 27 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02333 Viun-Chr11 37538948 37544601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02333 304 521 Glycoside Hydrolase AT3G54420 65.596 1.68e-102 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02333 K01183 - csin:114272607 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02333 11 37538948 37544601 Viun11g02333 11 37538948 37544601 ECH