Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02328 ATGGCCGTCAACGACGCCGATCAATCCAACAGGCCTCACAGAAATCGCCAATCCGGTTCCAAATCCGACAAGAAGAAGAGTAAGAAGAAGCAGAATCAGGATGCCGGAGGAGAGGATCAGAAAAGCCAAAACCCTAAAGCATTCGCTTTTTCTTCCTCCAACAAAGCCAAACGGTTGCAATCACGTGCCGTGGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAACCCGCTCCATACGTCGTCGTCGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAATCCCTGGTTAAGCATTACACTAAACATAATTTACCCGATGTTCGAGGTCCACTCACTATTGTCTCAGGAAAGCAAAGGCGGGTTCAGTTTGTGGAATGCCCAAATGATATCAATGGCATGATAGACGCGGCAAAGTTTGCAGATCTAGCGCTACTTCTCATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTCAAGGATGTGAAAAAGTTGAGGAAAACAAAACAAAGACTTAAACACCGTTTCTGGACGGAGATATACGATGGTGCTAAACTATTTTACTTATCAGGCCTAATTCATGGAAAGTATGTTAAGCGGGAAGTGCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCCTATGTTTTAGTTGACCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGTAAATGATAAATGTGATAGAAAAGTCACCCTTTATGGTTATCTTAGAGGTTGTAATTTGAAAAAGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGTTTAACTGCTATTACTGCTTTACCGGATCCTTGTCCTCTCCCATCTGCTGCAAAAAAGAAAGGGCTGCGGGATAAGGAAAGATTATTCTATGCTCCTATGTCTGGACTTGGGGATCTTTTGTATGACAAAGATGCTGTATACATAAATATTAACGACCACCTTGTTCAATTCTCAAAAGTTGATGGTGAAAACTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGAGAGCTTTTAGTGAAATCCCTGCAGAATACCAAATACTCTATCAATGAAAAACTGGAGAACAGCTCTATCAGTTTTTTTGGTGAAAAGTCTAAAGTGTCATCAGCAGCTCTTACTGACGCAAATGGTGAAAACAAGGATGTAGAACAGAATGAAGCTGTTATAAACACAAAGGTTTCAGATGGTTCAGAATCATCTGATCAGGATGAAGAGGACAACATGAAAGAGAGTGAAGCCTCTGATTCCGACAATGAAGATTCACCAAATAGTAATGGTTTGAAAGGAGACCAAATACAAGAACATATTGAGTTTCATGATGGAAGACGAAGGCGGAGAGCGATATTTGGAAATGATATTGATCAAAGTGATGTGATGGATTCAGAAGGAGATGAGGATGCTGCTGCAAGTGATGATCTTGTGTCTTCCGAAGAATCTTCAGAAGAAGAGGAGGAAGATGATAATGATAATGATAATGATGACACAAATGAAAATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTTTCACGGAAAGCTCCTAGCTTGATGCAACTTGTGTATGGGGAATCTATTAATAATTCAACCACAGCAAACTCAGAGAATGAGAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAGCATGAGAGATGGATTGGATGATGATGGAATGATCAACACTGAGGATTGTTCCAAGTGTACACAATTTGTGCAACAGAGATGGGATGAGGAGATTCGCAACCGCTTTGTGTCTGGAAATTTGGCAAAAGCTGCACTCAGAAATGCATTACAAACAGCAAATACTGAAGGGGAAAATGAAGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAGCATGAGAATAATCAGACAGATGATGCTCTTGCAGCAACAACACTAAAGGGAGATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACGTGCTCTCCGTGCAAAATTTGATTCTCAATTTGACAAAGACCCTGGGTCACCAGAAGAAGACACCGATAATGAAATTGAACGCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAGCTCCAGAAACAAAGGAATATAGCTGAACTCAATGATCTTGATGAAGATACCCGGTTGGAGATAGAAGGGTTCCGAACAGGGACATACCTAAGATTGGAGATTGATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTATAGGGGAGGAAAACGTTGGATATATGCAGACAAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATCATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATACCAATGGAAGGCATCGTATGCTTAAGTACACTCCGGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCTGTTCAGAATTTAGCGAACAATCAGGCAACATTTAGGATTACTGCCACTGCAGTTGTGCTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCCGCAAAAGAAGAAATAGGTAATCAAGCAAAAAAGAAGGGTGGGCAACCTAAAGAAGGAATTGCTAGGTGCACTTTTGAGGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTGGAAGTTCCTCAGTTTTATAATCCATTGACAACTGCATTGCAGCCTCGTGAAAAGACCTGGAAAGGAATGAGGACCGTTGCAGAATTGAGAAGAGAACACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTTCAAGCAAGTCTTCCCTTTGCATCAAAACCCAAGGATATACCCAAGCGAAAGAAGCCCTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTTATGGAACCTCGAGAGCGCAAAGTTCACGCTCTTGTTCAACATCTCCAGTTAATAAATAGTGACAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAAAGGAAAGAACTAGAAGCAGAGAGAGCAAAAGACGAGCAGTTGTCGAAGAAGCGCCGGAGAGAGGAAAGACGTGAAAAATACCGCGCACAAGACAAACAGAATAAGAGAATTCGAAGAGCAGAGGTTTGA 3591 0.4202 MAVNDADQSNRPHRNRQSGSKSDKKKSKKKQNQDAGGEDQKSQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHAPIIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPLTIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHVNDKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLTAITALPDPCPLPSAAKKKGLRDKERLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDGENSAMTSKGKDRDVGELLVKSLQNTKYSINEKLENSSISFFGEKSKVSSAALTDANGENKDVEQNEAVINTKVSDGSESSDQDEEDNMKESEASDSDNEDSPNSNGLKGDQIQEHIEFHDGRRRRRAIFGNDIDQSDVMDSEGDEDAAASDDLVSSEESSEEEEEDDNDNDNDDTNENGMGNVSKWKESLAERTLSRKAPSLMQLVYGESINNSTTANSENENSGDEESDDDFFKPIEEVKKQSMRDGLDDDGMINTEDCSKCTQFVQQRWDEEIRNRFVSGNLAKAALRNALQTANTEGENEDVYGDFEDLETGEKHENNQTDDALAATTLKGDDLEAEERRLKKRALRAKFDSQFDKDPGSPEEDTDNEIERKFHRGQANESSYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEIDDVPCEMVEYFDPYHPILVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDTNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLANNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKKKGGQPKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREKTWKGMRTVAELRREHNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINSDKMKKRKLKEEKKRKELEAERAKDEQLSKKRRREERREKYRAQDKQNKRIRRAEV 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02328 1196 MobiDBLite consensus disorder prediction 37 58 - -
Viun11g02328 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 222 IPR027417 -
Viun11g02328 1196 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 546 IPR039761 GO:0042254
Viun11g02328 1196 MobiDBLite consensus disorder prediction 1101 1116 - -
Viun11g02328 1196 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Viun11g02328 1196 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Viun11g02328 1196 MobiDBLite consensus disorder prediction 483 502 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 425 560 - -
Viun11g02328 1196 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Viun11g02328 1196 Gene3D - 86 248 IPR027417 -
Viun11g02328 1196 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Viun11g02328 1196 CDD BMS1 47 276 IPR037875 GO:0005525
Viun11g02328 1196 MobiDBLite consensus disorder prediction 1097 1116 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 581 626 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 1 68 - -
Viun11g02328 1196 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 707 1028 IPR007034 -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 1142 1196 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 726 749 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 508 545 - -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 605 626 - -
Viun11g02328 1196 Coils Coil 762 782 - -
Viun11g02328 1196 Coils Coil 1139 1178 - -
Viun11g02328 1196 SMART DUF663_2 690 1027 IPR007034 -
Viun11g02328 1196 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02328 Viun-Chr11 37496931 37505420 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02328 K14569 - gmx:100792176 1932.92