Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02296 ATGGCAACTTCGTTATTCCGCACCATAAGGAGAGCATCCTCTGCTCTCAAATTCTCGTACGCCGCCTCGTTTTCGGTCTCTCCCAGGTCAGTTGGGAGGAGCAAGATGTGTGTATGTTCTCCTTTGTGGCATCGTGTATCGCTAGGAGAGCAAGGTTATTGGTGGGGTTTAAGAAATTTGAGCCATGGCAGGGTGAACCTTGTGATAACAGGAGGGAAGACCAAGTTTGAGACTCATGAGGTTGAGCCTCCTAAGAAAGACAAGTGGAAGACCAAGAAGAGATTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCGGCTAACAGGAAAGACCCTCGTCGACTTGGTGTCAAAGGGAAGAAGAAAAAGCAGAGATTTGCCAGTGCAGATGAGAGAATTAAGTACAAGATTGAGAATGCCAGAATTAAGGAAGCATTGCTCATTGAAAGGCTGAAAAGATATGAAGTTCCTAAACTTCAGGGTCCTGTTGTGAAGCCTGATAGCTTGACGGGGGAAGAAAGGTTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCCTATGCAAGCCTTGTAAGCCGGGTCAGGTACACGAGTATGCACAAGAACTTGCCAGATTGAGCGGGGGTATTCCACTTCAAATAATTGGAGATGACACTATAATATTTTATCGTGGAAAAAACTATGAACAGCCTGATATTATGTCACCAATTGATACACTGTCCAAGAAAAAGGCTCTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGCGGCGCTTCATTGCTATTGCTGAGAAAGAACTAGAGCTATATTACAGACACGTTGCACTTTATGGTGATCCAAACAACCGAAATCCCTTATCAGTTCTGGACAGTCCAAGTGAAAACTCAAAGGAAAAAGGGAATCATGGAATTCAAGATAAAAAAATCCCTGACTTGAATAATGACTATTTTTCAGCCAGTCTTTCTGAGACTGAAGCTGATTCCACGGAAATGGAGCTGTCAGAAACAGAAGATAGTTTTGAAGATGAAAGCTTGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTCGGATTCCAATGGTAATCAAGAAAAGAAGGGAAAACATTTTTTTGTGGACACAGGCCACACAGTACTTCAAAGTGGACAATCAAAAACTAATCTTTATGATTGCATAATGCAGTTTCCACTTACCAAGAGGGTAAAACATTTGAACATTGTGAAATCCATAAGTTTCAAATCAAGAACTAATCTTAATAGTACAGCTATAGGAACTTGA 1380 0.4101 MATSLFRTIRRASSALKFSYAASFSVSPRSVGRSKMCVCSPLWHRVSLGEQGYWWGLRNLSHGRVNLVITGGKTKFETHEVEPPKKDKWKTKKRLKMQRKREKEKRKAANRKDPRRLGVKGKKKKQRFASADERIKYKIENARIKEALLIERLKRYEVPKLQGPVVKPDSLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVLCKPCKPGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPDIMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNNRNPLSVLDSPSENSKEKGNHGIQDKKIPDLNNDYFSASLSETEADSTEMELSETEDSFEDESLSMNESDSEEDSMSDSNGNQEKKGKHFFVDTGHTVLQSGQSKTNLYDCIMQFPLTKRVKHLNIVKSISFKSRTNLNSTAIGT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02296 459 SMART CRS1_YhbY_2 171 255 IPR001890 GO:0003723
Viun11g02296 459 MobiDBLite consensus disorder prediction 361 391 - -
Viun11g02296 459 MobiDBLite consensus disorder prediction 328 342 - -
Viun11g02296 459 Coils Coil 92 112 - -
Viun11g02296 459 MobiDBLite consensus disorder prediction 314 344 - -
Viun11g02296 459 Gene3D - 170 271 IPR035920 -
Viun11g02296 459 ProSiteProfiles CRM domain profile. 169 266 IPR001890 GO:0003723
Viun11g02296 459 MobiDBLite consensus disorder prediction 79 127 - -
Viun11g02296 459 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 58 398 IPR040286 -
Viun11g02296 459 MobiDBLite consensus disorder prediction 356 401 - -
Viun11g02296 459 Pfam CRS1 / YhbY (CRM) domain 171 255 IPR001890 GO:0003723
Viun11g02296 459 MobiDBLite consensus disorder prediction 89 106 - -
Viun11g02296 459 SUPERFAMILY YhbY-like 170 264 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02296 Viun-Chr11 37368394 37371867 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02296 - - vun:114168415 862.833