Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02237 ATGCAGATGCAACAAGTTCATGCATCAAATTCAAGCTATCTCATCTCTCACAGGCCAAGCCTCCGTGGCATACCTCAACCTTCTTTTCAGCTATGGTCAAGGCCATCGTCGTTCCCAACCCAAAGGAAGCTAAAAAGGGTGAGCCATGGTTGCAGAAACGATGTCACCAAAATCAAAGCTGTGGCTGTTAATAAAACTGAAAAATCTGTGAAAGTTAAAGCCACCATAAGTGTTCAGCCAACCATTGGTGGCATTTTCTCATCACTGGCCATCGACGCCGATGATCTAACGGATTTGCTCGGAAAATCACTTTTCGTCGAACTTCTTAGCGCTGAGCTTGATCCCAAGACGAAATTAGAGAAGAAACCCATCCAAGATTTTGCCCACAGGACGCATCGATCACCAAAAGAAGTTAGGTATTTGGCAGAGTTTGACGTGCCAGTAGACTTTGGAGAGATTGGGGCTATTTTGGTGGAGAACGAACATCGCAGGGAAATGTTCATCAAAGAAATTATCCTCGATGGCTTCGAATTGGGTCCCGTTAGATTTACCTGCGAGTCATGGCTTCATCCCAAGAAAGATAACCCTGTGAAAAGGGTTTTTTTCCCCGACAAGTCGTATTTGCCATCTGAAACACCAGAAGGAGTGAAGAGGGTAAGAGAAGAAGAACTACAACATTTACGAGGGAATGGACAAGGTGAACGCAAGAAGTTTGACAGAATATACGATTACGATGTTTACAACGACCTCGGAGATCCAGACAAGGACCCTGATCTCCAGAGACCGGTTCTTGGTGGCGCAGAACATCCATATCCAAGGCGTTGCAGAACAGGAAGGCCTCGCTCCGCAAAAGATTCGTTGTCGGAGGAAAGAACTTCTGACGTGTACGTGCCTAGAGACGAATGCTTCTCCGAAGTAAAGCAATTAACGTTTAACTCAAAGACGCTGGCTTCGGCATTGCAAGCGTTGGTACCAGCGCTGACGGCGCTCATCGTTGACAAGAATCTACCGTTTCAAGTGTTCTCGGAGATAGATGCTCTTTACGACGAAGGAGTTCCATTGCCTGCTGGACAAGGAAAAGTCAAACTCAGCACTCTCTTGCCCAGACTCGTCAGTTTAATTAAGGACAGAGGAGAAGACATTCTCCGTTTCGAGATTCCCGCAACAATGGACAAGGATAGATTCTTCTGGTTGAGGGACGAAGAATTTGGAAGACAAACTCTAGCGGGTCTTAACCCTTGTTGCATCCAGTTGGTCACGGAATGGCCATTGAAAAGCAATCTTGACCCTGCAATTTATGGCCCTGCGGAATCAGCCATCACCACTGAACTAGTTGAGCAGGAAATCAGAGGATTCCTTACAGTCGAAGAGGCCATAAAACAGAAGAGACTGTTCGTCTTGGACTACCACGATTTGTTATTGCCATTAGTGGAGGAGGTGAGAAAAATAGAAGGCACAACGCTATACGGATCGAGGGCATTGTTCTTCCTAACCCGCGACGGCACTTTGAGACCACTGGCCATTGAGCTGGTTCGGCCACCAATCGACGGAAAGCCTCAGTGGAAGAAAGTCTTCGCACCCACCTGGCACTCAACCGGTGTCTGGCTATGGCGGCTCGCCAAAATCCATGTCCTCGCTCACGACACCGGTTACCACCAACTCGTGAGTCACTGGCTAAGAACTCATTGTGCAACAGAGCCATACATTATAGCAGCAAACCGGCAACTGAGTGCAATGCACCCGATCTACAGATTACTGCATCCGCATTTCCGTTACACGATGGAGATCAACGCGCTTGCTCGAGAGTCTTTGATAAACGCCGGCGGAATAATAGAGCAGTGTTTTACTCCGCAGAAACACTCCGTTCTGCTAAGCTCAATCGCCTATGACAAACACTGGCGATTTGATCTCCAATCCCTCCCCAAGGACCTCATCCACAGGGGCTTGGCCGTGGAGGACCCCACCGCCCCTCACGGCCTCAAACTCACCATCGAAGACTACCCTTACGCCAACGACGGCCTCGACCTCTGGGCGGCTTTCAAATCGTGGTTCACCGAATACATCGACCACTACTACGCCGACTCCAACGCTGTTCAATCAGACACAGAGCTCCAAGCCTGGTGGGATGAGGTCATAAACGTTGGACACGCCGACAAAAAGGATGAACCGTGGTGGCCGGCGCTGAAAACCAAAGAGGACCTCGTTGAAGTCGTGACGACCATTGCGTGGACAACTTCGGGCCACCATGCTGCTGTGAACTTCGGACAATTCTCCTTCGCCGGCTATTTCCCCAACAGGCCAACCATTGCGCGTACCAACTTGCCCTTAGAGGACCCTTCGGACCCGGAGTGGGAGCTGTTCTTGCAGAAACCGGAGGTGACTATGTTGAAGTGTTTCCCGTCGCAGTATCAGGCCACCACGGTGATTACGGTGCTGGACGTTCTGTCGAATCACTCGCCGGACGAGGAGTATATCGGGACCTCAGTGGAGCCGGCGTGGGAGCAGGAGCCACGTGTGAAGGCGGCGTTTGAGAAGTTCAAAGGGAGATTGAATGAGCTTGAAGGGACCATCGATGAGAGGAATGCGGATCTGACGAAGAAGAACCGGAACGGCGCCGGGGTTGTGCCCTACGAACTTCTCAAGCCGACGTCGGAGGCCGGAGTTACCGGAAAGGGTGTTCCTTACAGCATCTCCATTTGA 2700 0.5033 MQMQQVHASNSSYLISHRPSLRGIPQPSFQLWSRPSSFPTQRKLKRVSHGCRNDVTKIKAVAVNKTEKSVKVKATISVQPTIGGIFSSLAIDADDLTDLLGKSLFVELLSAELDPKTKLEKKPIQDFAHRTHRSPKEVRYLAEFDVPVDFGEIGAILVENEHRREMFIKEIILDGFELGPVRFTCESWLHPKKDNPVKRVFFPDKSYLPSETPEGVKRVREEELQHLRGNGQGERKKFDRIYDYDVYNDLGDPDKDPDLQRPVLGGAEHPYPRRCRTGRPRSAKDSLSEERTSDVYVPRDECFSEVKQLTFNSKTLASALQALVPALTALIVDKNLPFQVFSEIDALYDEGVPLPAGQGKVKLSTLLPRLVSLIKDRGEDILRFEIPATMDKDRFFWLRDEEFGRQTLAGLNPCCIQLVTEWPLKSNLDPAIYGPAESAITTELVEQEIRGFLTVEEAIKQKRLFVLDYHDLLLPLVEEVRKIEGTTLYGSRALFFLTRDGTLRPLAIELVRPPIDGKPQWKKVFAPTWHSTGVWLWRLAKIHVLAHDTGYHQLVSHWLRTHCATEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINALARESLINAGGIIEQCFTPQKHSVLLSSIAYDKHWRFDLQSLPKDLIHRGLAVEDPTAPHGLKLTIEDYPYANDGLDLWAAFKSWFTEYIDHYYADSNAVQSDTELQAWWDEVINVGHADKKDEPWWPALKTKEDLVEVVTTIAWTTSGHHAAVNFGQFSFAGYFPNRPTIARTNLPLEDPSDPEWELFLQKPEVTMLKCFPSQYQATTVITVLDVLSNHSPDEEYIGTSVEPAWEQEPRVKAAFEKFKGRLNELEGTIDERNADLTKKNRNGAGVVPYELLKPTSEAGVTGKGVPYSISI 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02237 899 Gene3D - 532 898 - -
Viun11g02237 899 PRINTS Lipoxygenase signature 552 569 IPR013819 GO:0016702|GO:0046872
Viun11g02237 899 PRINTS Lipoxygenase signature 534 551 IPR013819 GO:0016702|GO:0046872
Viun11g02237 899 PRINTS Lipoxygenase signature 572 592 IPR013819 GO:0016702|GO:0046872
Viun11g02237 899 FunFam Lipoxygenase 531 898 - -
Viun11g02237 899 SUPERFAMILY Lipoxigenase 208 899 IPR036226 -
Viun11g02237 899 CDD PLAT_LH2 70 204 IPR042057 -
Viun11g02237 899 ProSiteProfiles PLAT domain profile. 85 203 IPR001024 GO:0005515
Viun11g02237 899 PANTHER LIPOXYGENASE 70 899 IPR000907 GO:0016702|GO:0034440|GO:0046872
Viun11g02237 899 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 57 207 IPR036392 GO:0005515
Viun11g02237 899 Pfam Lipoxygenase 216 882 IPR013819 GO:0016702|GO:0046872
Viun11g02237 899 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 206 899 IPR013819 GO:0016702|GO:0046872
Viun11g02237 899 MobiDBLite consensus disorder prediction 251 291 - -
Viun11g02237 899 Pfam PLAT/LH2 domain 137 202 IPR001024 GO:0005515
Viun11g02237 899 Gene3D - 396 529 - -
Viun11g02237 899 ProSitePatterns Lipoxygenases iron-binding region signature 1. 552 566 IPR020833 GO:0016702|GO:0046872
Viun11g02237 899 Gene3D - 208 306 - -
Viun11g02237 899 PRINTS Plant lipoxygenase signature 238 254 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 382 398 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 489 513 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 270 289 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 173 191 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 421 440 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 812 826 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 199 220 IPR001246 GO:0016491
Viun11g02237 899 PRINTS Plant lipoxygenase signature 335 356 IPR001246 GO:0016491
Viun11g02237 899 SMART LH2_4 70 204 IPR001024 GO:0005515
Viun11g02237 899 MobiDBLite consensus disorder prediction 272 291 - -
Viun11g02237 899 Gene3D - 307 394 IPR027433 -
Viun11g02237 899 ProSitePatterns Lipoxygenases iron-binding region signature 2. 579 589 IPR020834 GO:0016702|GO:0046872
Viun11g02237 899 Coils Coil 850 870 - -
Viun11g02237 899 Gene3D PLAT/LH2 domain 49 207 - -
Viun11g02237 899 FunFam Lipoxygenase 414 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02237 Viun-Chr11 37111299 37116074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02237 146 899 Acyl Lipid Metabolism Gene Families AT3G45140 60.658 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02237 K00454 - gmx:100787202 1452.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02237 11 37111299 37116074 Viun11g02237 11 37111299 37116074 ECH