Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02192 ATGGTTCCAAATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTAGTCAGGTTGATGTACCGTTAGAAGTGGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACTCCGAACCCCGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGACGCTATTGGTGGCATGGGCTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATGGCATGAATGAGCCTTCTGTTCTTGAACTATCACAAGACACGGTAAAGGATCAAACATACTTCCTTTCACACCTTTCACAATCCCAGCTGAAGCAACTTCTCTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCGACAAAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGGGAAAGAGAAGGTATCATACTGGAGGCTGAGACAGGAGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGACTACCTGGAGGTCCATGGTATGTTGTCGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGGTGCCCCCAGGCCAGACAAGTCAGCTACAGTGCAAGGTGAGACATGGTCCTGGATTCTACGATTGTAACTTACAAATGGAAGTGGAAGGAGATGGCCAAGGTCACTCTGCAGTTGTCCGCATATTTGAAGATGATCAAGGCCTGGCAGCTGGGCAGTTTGCGGCCTTTTATGAGGGAAGAAGATGCTTAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGATCATAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCGATGCTTGGAAATCCAGTAAAAATAAAAGTTAAACCAGATAGCCCCCAAGAAGTATGTGATTCTGCCGAGTTAGCAAGTAAAACATCATAA 1146 0.4232 MVPNFENFWSECPWEEDLKYAKAVCSQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGMNEPSVLELSQDTVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSEVPPGQTSQLQCKVRHGPGFYDCNLQMEVEGDGQGHSAVVRIFEDDQGLAAGQFAAFYEGRRCLGSGVILEFWDDHSFPVCTKALEIARMEDKSMLGNPVKIKVKPDSPQEVCDSAELASKTS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02192 381 Gene3D - 180 239 IPR023382 GO:0016783
Viun11g02192 381 FunFam tRNA-specific 2-thiouridylase MnmA 180 239 - -
Viun11g02192 381 PANTHER - 4 370 - -
Viun11g02192 381 Gene3D Translation factors 246 335 - -
Viun11g02192 381 Pfam tRNA methyl transferase HUP domain 7 170 - -
Viun11g02192 381 CDD tRNA_Me_trans 12 327 IPR004506 GO:0008033|GO:0016740
Viun11g02192 381 Pfam Aminomethyltransferase beta-barrel domain 247 327 IPR046885 -
Viun11g02192 381 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 11 327 IPR004506 GO:0008033|GO:0016740
Viun11g02192 381 Pfam tRNA methyl transferase PRC-barrel domain 175 237 IPR046884 -
Viun11g02192 381 Gene3D HUPs 2 179 IPR014729 -
Viun11g02192 381 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02192 Viun-Chr11 36801924 36805721 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02192 K21027 - gmx:100785275 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02192 11 36801924 36805721 Viun11g02192 11 36801924 36805721 ECH