Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02175 ATGGCTAGTCGTTCCTTCTCGAAAGTTCCGAAAATCTGTGATTTTCGTTCTTTATTAGTGGGACAGCTTACGAGAACTACTAAACTTATCGAACACGGTTCAGCTCCACTGCCCTTCGTTGAATCTACTTCATTGAAAACGACGTCGTGTTGGAGGCAATACCACGACGGAAGGCCCAGAGGCCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAAGCGCTCTTTGTGATATTGGGCTTGAAGAGGTTTAAGGATGACGAGGATAAGCTTCAAAAGTTCATGAAATCTCACGTTCTCAGACTCTTGAAGATGGACATGATCGCCGTTCTCACTGAACTTGAGCGTCAAGAACAAGTTTCTCTCGCTCTCAAGATGTTTAAGGTTATGCAAAAGCAAGATTGGTACAAACCTGATACATTCCTCTATAAGGACTTAATCATTGCATTGGCAAGGTCCAAAAAAATGGACGAAGTGTTGCAATTGTGGGAAAGCATGCGAAAGGAAAATTTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCGGATGCGATGAACATATACGAGGACATGAAGAATTCCCCGGATCCACCTGACGAGTTGCCATTCAGAATTTTGTTGAAAGGACTGCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAGATTTTTCCTGATTCAAATATCTATGATCCACCACAAGAGATATTTGGCGCGCGCTGA 765 0.4327 MASRSFSKVPKICDFRSLLVGQLTRTTKLIEHGSAPLPFVESTSLKTTSCWRQYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDDEDKLQKFMKSHVLRLLKMDMIAVLTELERQEQVSLALKMFKVMQKQDWYKPDTFLYKDLIIALARSKKMDEVLQLWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSNIYDPPQEIFGAR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02175 254 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Viun11g02175 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Viun11g02175 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 40 253 IPR044795 -
Viun11g02175 254 Pfam PPR repeat family 138 185 IPR002885 -
Viun11g02175 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Viun11g02175 254 NCBIfam pentatricopeptide repeat 145 174 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02175 Viun-Chr11 36708776 36710918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02175 97 251 Miscellaneous Gene Families AT4G11690 23.871 2.74e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02175 - - gmx:100798492 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02175 11 36708776 36710918 Viun11g02175 11 36708776 36710918 ECH