Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02155 ATGTTGTCTGAATTGGAAAGAAGACCGATGATGGGTAGTAACGAGGGCTCGTTTGGAGATGACCTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCCGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATATTTAGGAGTGGATCAGCGCCTCCAACCGTGGAGGGTTCTTTAAGTGCTGTGGGAGGGTTGTTTGGTGGTGGTGCTGTTGCCGGTGCTGGTGGTGGTGGTGCCGGTGCCTTTTCGGAGTTTCATGGGGCTAAGGATGTGAATGGGATTGCTTCCGAGGAAGAGTTAAGGTCTGATCCAGCTTATCTTACATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGGCTTAAAGGTGGTTCGTCAGTTGTGGGTGGAATCGGAGATAGGAGGAAAGTGAACAGGGCTGACGATACTGGTGGTAGATCCTTCTTTTCTACTCCCCCGGGTTTTAACATGAGGAAACAAGAGAGTGAAGTGGATAATGAAAAAACAAGAGGTACTGCAGAGTGGGGTGGTGGTGGACTGATTGGGTTGCCTGGAATAGGGCTGAGCAAACAAAAGAGTTTTGCAGAAATTTTCCAGGATGATTTGGTACGTAATACCTCTGTCACAGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAACGATATCCTTAGTTCTGCTGAAGCAGAGTTAGCTCATGTACGTCGTGAGTCCACGACAACTGATGGACTGAGGTCAGGATCAAATGTTCAAGGATCATCTGCATCCCAAAATACTGGCCTGCCAGCTTCATATTCTTATGCTGCAGCGGTTGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAGCATGTTGCTAGGGCACCCAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCTACACCTTCTGACAAGAGAGTTATTGCCGGTCCAGATGGATTTAATAGTGTTTCATCTGACATCAATGAGTCAGCAGATCTTGTGGCAGCACTGTCAGTGATGAATTTGTCAGCAGATAACATGTTAGATGGTGATAACCACTTGTCAGCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCACGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATGCAAGTAAGAGCAGGAACGGTTCTGATCTTAGCAATCCGTCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTAATGTTCCTTCAAATAATTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCACCGCAGTACCAACCTTTAGATGGTTCAAATTCATCATATACTAACTATGATCTGAGTGGGTACTCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAACGTTGCTGCAGCATCTGCAATGGTAGCCCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCTTCTCGAGCTGCTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCTATGTATCTTCAGTACCTGAGAACATCTGAATATGCAGCACAACTTGGTGCTCTTAATGACCCCTCTGTTGATAGGAACTACTTGGGCAATTCATATATGAGTTTTCTTGAGCTTCAAAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCTCAATACAATGTACCATTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCTTATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTGGTATCCACTTCTCCTGTAGGATCTGGAAGTCCTGTTAGGCACAATGAAATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTTTTGGAGGAGTTTAAAAGCAACAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATACGGTAGCCGATTTATTCAACAAAAGCTTGAAACGGCCACTACTGAAGAAAAAAACATGGTTTATCAAGAAATCATGCCACATGCCCTTGCATTGATGACTGACGTCTTTGGTAATTATGTTGTTCAAAAGTTTTTTGAGCATGGACTTGTAGCCCAGAGAAGAGAATTGGCAAACAAACTTCTTGGCCATGTTCTTACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATCTAGATCAGAAGATAGAAATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAAAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCATTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTCTCAACCCATCCATATGGTTGCCGGGTTATACAGAGAGTACTGGAACATTGCAAAGATCTTACAACACAGCAGAAAGTTATGGATGAAATTCTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAATTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGTTCTGCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCATCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTACATGAGATGCTTGGCTCCACAGATGAAAACGAGCCTCTTCAGGCCATGATGAAAGACCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAACGCGAACTGATTCTTTCACGGATTAAGGTTCATTTAAATGCATTGAAGAAGTACACGTATGGGAAGCACATCGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCAGCTCAGTCTCCCCAACCTGCTTAG 3147 0.4414 MLSELERRPMMGSNEGSFGDDLEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGAVAGAGGGGAGAFSEFHGAKDVNGIASEEELRSDPAYLTYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGSSVVGGIGDRRKVNRADDTGGRSFFSTPPGFNMRKQESEVDNEKTRGTAEWGGGGLIGLPGIGLSKQKSFAEIFQDDLVRNTSVTGPPSRPASRNAFDDNDILSSAEAELAHVRRESTTTDGLRSGSNVQGSSASQNTGLPASYSYAAAVGSSLSRSTTPDPQHVARAPSPCITPIGGGRATPSDKRVIAGPDGFNSVSSDINESADLVAALSVMNLSADNMLDGDNHLSAQVESDVDNHQRYLFGRQGGQDHGKQHAYLKKSESAHLQNASKSRNGSDLSNPSLDRQVELQKSNVPSNNSYFKGSPTSHFSRGGSLPPQYQPLDGSNSSYTNYDLSGYSGNPALASLMTNQLGTGNLPPLFENVAAASAMVAPGMDSRILGGGLASRAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAQLGALNDPSVDRNYLGNSYMSFLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGSGSPVRHNEMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLVAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDLTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 894 929 IPR001313 GO:0003723
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 821 856 IPR001313 GO:0003723
Viun11g02155 1048 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 1032 - -
Viun11g02155 1048 SUPERFAMILY ARM repeat 696 1030 IPR016024 -
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 930 965 IPR001313 GO:0003723
Viun11g02155 1048 MobiDBLite consensus disorder prediction 145 193 - -
Viun11g02155 1048 Gene3D - 693 1039 IPR011989 -
Viun11g02155 1048 CDD Pumilio 709 1029 IPR033712 GO:0003723
Viun11g02155 1048 Pfam Nucleic acid binding protein NABP 308 712 IPR012940 -
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 857 893 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 972 1007 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 894 929 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 785 820 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 821 856 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 857 893 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 749 784 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 713 748 IPR001313 GO:0003723
Viun11g02155 1048 SMART pum_5 930 965 IPR001313 GO:0003723
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 713 748 IPR001313 GO:0003723
Viun11g02155 1048 MobiDBLite consensus disorder prediction 261 279 - -
Viun11g02155 1048 MobiDBLite consensus disorder prediction 294 330 - -
Viun11g02155 1048 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g02155 1048 MobiDBLite consensus disorder prediction 386 468 - -
Viun11g02155 1048 FunFam Pumilio homolog 1 isoform 2 692 1039 - -
Viun11g02155 1048 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 693 1033 IPR033133 GO:0003723
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 785 820 IPR001313 GO:0003723
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 749 784 IPR001313 GO:0003723
Viun11g02155 1048 MobiDBLite consensus disorder prediction 254 279 - -
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 753 786 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 900 931 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 935 968 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 861 896 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 980 1009 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 717 751 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 832 855 IPR001313 GO:0003723
Viun11g02155 1048 Pfam Pumilio-family RNA binding repeat 789 822 IPR001313 GO:0003723
Viun11g02155 1048 ProSiteProfiles Pumilio RNA-binding repeat profile. 966 1007 IPR001313 GO:0003723
Viun11g02155 1048 MobiDBLite consensus disorder prediction 222 242 - -
Viun11g02155 1048 MobiDBLite consensus disorder prediction 404 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02155 Viun-Chr11 36620683 36627290 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02155 K17943 - gmx:100787039 1808.11