Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02078 ATGGAGGTTAACCTTTCTCCTCAATTGGCCAAGAAGGTGTACGAGAGCAATGGTGGATCATACTATGCATGGTCCCCTTCTGAGCTTCCCATGTTGCGTGAAGGAAACATTGCTGCTGCCAAGCTAGCTCTTCTGAAGAATGGTTTTGCCCTTCCTCAGTACTCTGACTCTTCCAAGGTTGCATACGTTCTACAAGGAAGTGGAGTTGCAGGAATTGTTCTCCCCGAATCACAAGAGAAGGTTGTTGCAATTAAGAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTGGTGACATGGTGGTACAACAAGGAGGATACTGAGTTGGTAATTCTGTTCCTGGGTGAAACTTCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTTTCTGACTGGTGCTAATGGAATCTTCACTGGATTTTCAACTGAGTTTGTGGGGAGGGCCTGGGACTTGGAAGAAAAGGTTGTGAAAGCCCTTGTTGGGAATCAATCAGGTAAGGGTATTGTGAAGCTTGAAGGAAACATCAAGCTTCCAGAGCCTAAAGAGGAACATAGGAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATAAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTGGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGTTGGATGGAAAAGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCATATCAGGTTACCTACATTGTGAGGGGAAGTGGTCGTGCTCAGGTTGTTGGTGTTGATGGTCGTAGGGTTTTGGAGACAACTGTGAAAGCTGGAAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTGTCCAAGATTGCTGACAATGATGGCCTCGAGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACTCATCTGGCTGGAAGTATTGGGGCATGGAAAGCTCTTTCACCAACGGTTCTGCAGGCTGCTTTCAATGTGGATGCAGAAGTTGAGAAAGTCTTTCGTTCAAAGAGGAATGCAGATGCCATTTTCTTCCCTCCTCCAAATTGA 1071 0.4603 MEVNLSPQLAKKVYESNGGSYYAWSPSELPMLREGNIAAAKLALLKNGFALPQYSDSSKVAYVLQGSGVAGIVLPESQEKVVAIKKGDALALPFGVVTWWYNKEDTELVILFLGETSKAHKTGEFTDFFLTGANGIFTGFSTEFVGRAWDLEEKVVKALVGNQSGKGIVKLEGNIKLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSAYQVTYIVRGSGRAQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADNDGLEWFSIITTPNPVFTHLAGSIGAWKALSPTVLQAAFNVDAEVEKVFRSKRNADAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02078 356 Pfam Cupin 10 156 IPR006045 -
Viun11g02078 356 Pfam Cupin 199 338 IPR006045 -
Viun11g02078 356 Gene3D Jelly Rolls 3 194 IPR014710 -
Viun11g02078 356 CDD cupin_11S_legumin_N 4 173 - -
Viun11g02078 356 CDD cupin_11S_legumin_C 198 353 - -
Viun11g02078 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Viun11g02078 356 SMART Cupin_1_3 3 157 IPR006045 -
Viun11g02078 356 SMART Cupin_1_3 195 339 IPR006045 -
Viun11g02078 356 FunFam Glycinin G1 192 356 - -
Viun11g02078 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Viun11g02078 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Viun11g02078 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Viun11g02078 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Viun11g02078 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Viun11g02078 356 SUPERFAMILY RmlC-like cupins 11 346 IPR011051 -
Viun11g02078 356 PANTHER OS03G0336100 PROTEIN-RELATED 7 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02078 Viun-Chr11 36193979 36196293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02078 35 351 Miscellaneous Gene Families AT2G18540 21.526 1.06e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02078 - - gmx:100782055 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03500 5 44921513 44924064 Viun11g02078 11 36193979 36196293 PCT