Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01994 ATGCTTAAAAATCAAGGTATGTTCTCATTGACAAGAAATTGCTTAAAATATCGTACTACCTACTTCAGGAGGAATATCCCAAATGAAACCATACTCTCCACACTCTCATTTTGCCACAAATTTCATGACCCCAATGAGAAAAATTTACCCAAGATTGTTTTTTTTTATCACACCCACAAATTTGACCGCTTTTCATTCCAAATCAACAGTAGTTGCATTCAATTCCCTGTTCCATTTGCACCCTTTAATTCACCCTATTCAACTAATGCTCCTTCGAGATCTTACCGAAGACGAGCTAGAAATAGGTTGTTGAAGTCCAGCAAGCCTACCTTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCCCCAAGGTTCACTACCGAAGAACTGTGCACTGTGATTGGTCGACAAGATAATCCCTTGGTTTGCTTAGAACTATTTCACTGGGCATCTCAACAGCCACGATTTCAGCACGATGTGTCCACGTTTCATGTCACCATAAAGAAGCTTGGTACGGCAAAGATGTTCCAAGAAATGGATGACATTGTGAACCAAGTGATTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACACAGTTATATATTATTTCACTCAGGCACGGAAGCTTACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAATAAAAGGAATTTAATTTGCTGTTATAGGCCTTCTATTAGAACCTATAATATTCTTTTTGCTGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGATGTCTGTTTAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTACGTGCTATCTCTTCATGTTAATGATGCATTGAGGATATTTCATCAAATGGGTGTGGTTTATGATTGTCAACCCAATGCGTTGACATATGATTGCTTGATTCACGGCTTGTGTTCCCAGGGCAGAACAAATAATGCCAAAGAGTTATTTAATGAAATGAAGACCAAAGGTTTTGTTCCTGGTAGTAAATCTTATAATTCGCTTGTCAACTCTTTGGCGCTTGGTGGAGAGATTGGGGAAGCAGTAAATTATCTGTGGGAGATGACTGATAAGCAAAGGTCACCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAACAATTCAGGAGGGCATGAGTTTTTTACAGGAGTTGCAAGAAAAGGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTGTATGTGCTTGAGGATGACTATGGGTATTCGGGAAGCAGAAACATGGGAATTGAGTGA 1338 0.3909 MLKNQGMFSLTRNCLKYRTTYFRRNIPNETILSTLSFCHKFHDPNEKNLPKIVFFYHTHKFDRFSFQINSSCIQFPVPFAPFNSPYSTNAPSRSYRRRARNRLLKSSKPTLDQAQFQLALSQLPPRFTTEELCTVIGRQDNPLVCLELFHWASQQPRFQHDVSTFHVTIKKLGTAKMFQEMDDIVNQVIAVPLIGSEALFNTVIYYFTQARKLTRAVNVFKHMKNKRNLICCYRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNALTYDCLIHGLCSQGRTNNAKELFNEMKTKGFVPGSKSYNSLVNSLALGGEIGEAVNYLWEMTDKQRSPDFITYRTVLDEICRQGTIQEGMSFLQELQEKDLVDGHAYRKLLYVLEDDYGYSGSRNMGIE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01994 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Viun11g01994 445 PANTHER ATPASE EXPRESSION PROTEIN 3 67 428 - -
Viun11g01994 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Viun11g01994 445 Gene3D Tetratricopeptide repeat domain 252 345 IPR011990 GO:0005515
Viun11g01994 445 NCBIfam pentatricopeptide repeat 282 316 IPR002885 -
Viun11g01994 445 NCBIfam pentatricopeptide repeat 318 350 IPR002885 -
Viun11g01994 445 Pfam PPR repeat 282 306 IPR002885 -
Viun11g01994 445 Pfam PPR repeat family 314 362 IPR002885 -
Viun11g01994 445 Gene3D Tetratricopeptide repeat domain 100 251 IPR011990 GO:0005515
Viun11g01994 445 Gene3D Tetratricopeptide repeat domain 346 434 IPR011990 GO:0005515
Viun11g01994 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Viun11g01994 445 Pfam Pentatricopeptide repeat domain 200 247 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01994 Viun-Chr11 35581818 35585766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01994 239 440 Glycosyltransferase AT1G05670 22.277 3.63e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01994 - - var:108340576 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01994 11 35581818 35585766 Viun11g01994 11 35581818 35585766 ECH