Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01987 ATGCATAGGATCGTCACCGCAAGGTCCTTTTTTTCTGCTGTTTTCAGAAGCAAACCTCAACCTCACTCTGCTGCCTTTTCCACATCGTTACTCTTCGATGAAACTCAGATACAGTTTAAAGAAAGTGTTTCTCAGTTTGCAACGGAAAATATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTATTTCCCTAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTCAATCTCCTTGGGATTACTGCTCCAGAGGAATATGGAGGGCTTGGTCTAGGTTACTTGTACCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCGGCATCAGTTGGTCTTTCTTATGGTGCTCATTCAAACTTGTGTGTGAATCAGCTGGTGAGAAATGGAAGTCCTGCTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCACGTGGGAGCTTTGGCAATGAGTGAGCCCAATTCTGGGTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGAGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTGAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATTATCGAGAAGGGAATGTCTGGATTCAGTACTGCCCAGAAATTGGACAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAGGGAAAAGGAGTATATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTGGGTATTATGCAGTCATGTCTTGATGTTGTTCTTCCTTATGTTCGACAGAGAGAGCAGTTTGGTCGTCCCATCGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTGCATTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGAGACTGTGACAATGGAAAGGTTGACCCAAAGGATTGTGCTGGAGCCATACTTTGTGCTGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAGTGTTTAGGTGGGAATGGCTACGTGAATGAGTATCCTACTGGTCGTCTTCTGAGAGATGCCAAACTCTACGAGATTGGAGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTTTTCAAGGAGCAATAG 1233 0.438 MHRIVTARSFFSAVFRSKPQPHSAAFSTSLLFDETQIQFKESVSQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLSYGAHSNLCVNQLVRNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAETLVVYAKTDITAGSKGITAFIIEKGMSGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQSCLDVVLPYVRQREQFGRPIGEFQFIQGKIADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01987 410 Gene3D - 150 262 IPR046373 GO:0016627
Viun11g01987 410 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 406 IPR009075 GO:0016627
Viun11g01987 410 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 150 263 - -
Viun11g01987 410 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Viun11g01987 410 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 25 148 - -
Viun11g01987 410 Gene3D - 263 406 - -
Viun11g01987 410 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Viun11g01987 410 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 147 IPR013786 GO:0016627|GO:0050660
Viun11g01987 410 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 408 IPR036250 GO:0016627
Viun11g01987 410 PANTHER ACYL-COA DEHYDROGENASE 31 409 - -
Viun11g01987 410 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 264 408 - -
Viun11g01987 410 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 365 384 IPR006089 GO:0003995
Viun11g01987 410 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Viun11g01987 410 PIRSF PIGM 158 410 - -
Viun11g01987 410 PIRSF PIGM 28 126 - -
Viun11g01987 410 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Viun11g01987 410 CDD IVD 32 408 IPR034183 GO:0003995
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01987 Viun-Chr11 35533811 35539724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01987 1 410 Acyl Lipid Metabolism Gene Families AT3G45300 84.146 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01987 K00253 - gmx:100794259 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01987 11 35533811 35539724 Viun11g01987 11 35533811 35539724 ECH