Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01956 ATGACAAAGAGGATACGTTTGGCTGCTTGTTCCTTGCAGGAGGATGAAGAGAAAGAGAATAATAATAGCTTTGTGGAATTGGATACAAGGGTAGGAGGTAATGATGGTTTTCCTAGAATTGGACCAAATGATTCGCTTCTCCCTGGTCTTTTTGATGATGTTGCGCTAAACTGTCTTGCTTGGGTTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAAAGCTACAACTTGTTGATTAGGAGTGGGTATCTATCCGGGCTGAGGAAGAAGTTAGGGATTGTGGAGCTAGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGGTGGGAGGCATTTGACCCTAAGAGAAATAGATGGATAACATTACCTAAAATACCTTGTGATGAGTGTTTTAATCATGCAGACAAGGAGTCCTTGGCTGTGGGGGGTGAATTGTTGGTGTTTGGAAGGGAACTGATGGATTTTGCCATTTGGAAGTACAGCTTGATTTGCCTTGGTTGGGTGAAGTGTGAGGAGATGAACCGACCTAGGTGCTTGTTCGCATCTGGCAGTCTTGGTTCAATTGCCATTGTTGCTGGTGGAAGTGATAAGTATGGAAATGTTCTTGAATCAGCTGAGTTGTATGACTCTTCTTCAGGTACATGGGAACTGTTGCCGAACATGCACACACCACGTAGATTGTGCTCTGGTTTTTTCATGGATGGCAAGTTCTATGTGATTGGTGGCATGTCAAGTCCTACTGTTTCATTGACTTGTGGGGAGGAGTATGATCTTAAGACAAGAAATTGGCGGAAAATAGAGGGTATGTACCCGTATGTTAATGGGGCTGCTCAGGCTCCTCCACTTGTGGCAGTTGTGGATAATGTGCTGTATGCAGTTGAGCATCTTACCAACATGGTGAAGAAATATGACAAGGAAAATAACAGTTGGAGTGAACTGGGAAGACTTCCAGTTCGGGCTGATTCTTCAAATGGATGGGGCCTGGCTTTCAAGGCTTGTGGAGAGAAACTTCTGGTTGTGGGTGGACAAAGAGGTCCAGAAGGTGAAGCTGTTGTACTGAACTCATGGTGTCCTAGGACAGGGGTCAGGGGTGGAACCATAGATTGGCAAGTACTTGGTGTTAAGGAGCATGTTGGGGTGTTTGTTTACAATTGTGCTGTTATGGGATGGTCTGGTGAGATGCTTCTAGATTGA 1200 0.4417 MTKRIRLAACSLQEDEEKENNNSFVELDTRVGGNDGFPRIGPNDSLLPGLFDDVALNCLAWVSRSDYASLACINKSYNLLIRSGYLSGLRKKLGIVELEHLVYLVCDPRGWEAFDPKRNRWITLPKIPCDECFNHADKESLAVGGELLVFGRELMDFAIWKYSLICLGWVKCEEMNRPRCLFASGSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYDLKTRNWRKIEGMYPYVNGAAQAPPLVAVVDNVLYAVEHLTNMVKKYDKENNSWSELGRLPVRADSSNGWGLAFKACGEKLLVVGGQRGPEGEAVVLNSWCPRTGVRGGTIDWQVLGVKEHVGVFVYNCAVMGWSGEMLLD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01956 399 Gene3D - 102 373 IPR015915 GO:0005515
Viun11g01956 399 FunFam F-box/kelch-repeat protein SKIP11 92 376 - -
Viun11g01956 399 Pfam Kelch motif 226 271 IPR006652 GO:0005515
Viun11g01956 399 Pfam Kelch motif 178 223 IPR006652 GO:0005515
Viun11g01956 399 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 44 391 - -
Viun11g01956 399 SMART kelc_smart 238 290 IPR006652 GO:0005515
Viun11g01956 399 SMART kelc_smart 190 237 IPR006652 GO:0005515
Viun11g01956 399 SUPERFAMILY Kelch motif 110 349 IPR015915 GO:0005515
Viun11g01956 399 CDD F-box_AtAFR-like 46 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01956 Viun-Chr11 35291888 35294112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01956 50 269 Miscellaneous Gene Families AT4G33900 25.909 3.19e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01956 - - gmx:100792139 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01956 11 35291888 35294112 Viun11g01956 11 35291888 35294112 ECH