Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01937 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTGCCTTCGTATACGTGCATTCGGGAGGGTCCTGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCAATACTGCTCCACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCGCTCAATTCGCTCTCCAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTCCTGCAGGAAATTGCACAGAGGGTAGCGGCGCCATTGCCGCAGTACTTTACGTTCAGGTCAGGCTTAGGACATCTTCCTGTGTTTACTGGGACAGTTGAGTTGGCTGGAATTATGTTTACTGGTGAACCTGCTAAGAACAAGAAACAAGCGGAGAAAAATGCAGCTATGGCGGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCTGAGAACAACGACGAACTAGAACAGATCACTATAGCACGGGCTTTGCGGAACTACCGTCTGAAGGAAAAGATTTCAATGTCAAATCCAAATGCGCCAATTCCATTTCCGAAGAAGTTTCAAATTCAAAATCCCAGACCAACCAGTCCTCAGCCTCCTCCTGCTGCTACATCAAAGATTCTTCCCTTAATATGCCAAAAGACAGCTTCTCGAAGCAGGCATCCTGTCTCAGCATCTCCAGCATCAGTTGTCAGTGATAACTCTGCGATGCCACAACTTTCTGCCACATCAGATATCCGAAGAATTCGTCGCCCTAAGTTCCCTGCTGCTGGAGCAGCACCTTATGTTCCCATTAGACAAATGAGACCACCTTGCCAGGGAATGGCACCTCCAGTGACGATAAGGACTGCTATACCTGTATTCTCTCCACCACCGCCAACAGCCGCCACAATGTCCCTTCCGGTACTACGAGCTCCTCCTGTACGAGTCGCTCCTCCTGTCACTATTAGGCAAGCTGTTCCAGTATTTGCTGCTCCACCTGTTCGAATAGACGAACCTGTTCCCAGCCTTACCAGCCTAGAACCCGTTCCTACCCCAAAAGACGATGCTCCTACTATTAGTTCCCCCAGCCCGGAAGACAAACTACCAGTTAAAACTCCAGAGACAGAGATGAAGACGGAGAAAATTCCAGCTGAATCTGAGACAGTGCAGAGCTTGGCGCAGCTGAAAATTTGA 1233 0.5085 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVAAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALRNYRLKEKISMSNPNAPIPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKTASRSRHPVSASPASVVSDNSAMPQLSATSDIRRIRRPKFPAAGAAPYVPIRQMRPPCQGMAPPVTIRTAIPVFSPPPPTAATMSLPVLRAPPVRVAPPVTIRQAVPVFAAPPVRIDEPVPSLTSLEPVPTPKDDAPTISSPSPEDKLPVKTPETEMKTEKIPAESETVQSLAQLKI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01937 410 PANTHER - 1 346 - -
Viun11g01937 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Viun11g01937 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Viun11g01937 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Viun11g01937 410 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Viun11g01937 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Viun11g01937 410 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Viun11g01937 410 MobiDBLite consensus disorder prediction 352 410 - -
Viun11g01937 410 SMART DRBM_3 2 69 IPR014720 -
Viun11g01937 410 SMART DRBM_3 88 154 IPR014720 -
Viun11g01937 410 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Viun11g01937 410 Gene3D - 84 155 - -
Viun11g01937 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Viun11g01937 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Viun11g01937 410 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Viun11g01937 410 Gene3D - 2 83 - -
Viun11g01937 410 MobiDBLite consensus disorder prediction 382 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01937 Viun-Chr11 35174045 35177772 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01937 - - gmx:100816445 667.151