Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01872 ATGGGCGCGAAAAAGAAGTCCGGTGGCGGAAACGGCAACAAGGAGAACGAGAACGGCACCACAACCGTCGTTTTGAAGCTCGACTTCCACTGCGACGGTTGCGCTTCCAAAATCACTCGACACCTCCGTGCTCTCCAAGGTGTGGAGACGGTGAAGGCGGAGAGCGACGCCGGGAAGGTAACGGTGACCGGGAAATTGGACCCCGTGAAGGTGAGGGACAACCTGGCGGAGAAGATGAAGAAGAAGGTGGAAATCGTCTCTCCGCAGCCGAAGAAGGACAAGGACAAAGACAAGGAGAAGGAGAAGGAAGAGAATAAAGACGCCAAAACCAACAACAAAAACCAGGACAAGAAAAACAAAGACAAAGAGGTGGTGGCTACAGCGGTTCTGAAGATGGCACTGCATTGCCAAGGTTGCTTGGACAGGATTAGCAAGACTGTGCGGAAAACCAAAGGAGTGAAAGAGATGGCTATAGACAAGGAAAAGGAAACGGTGACTGTGAAAGGGACAATGGATGTTAAGGCTCTGGCGGAGAATCTAATGGAGAAGCTGAGGAGGAAGGTTGAGGTGGTCCCTCCCAAGAAAGAGAAGGAGGGTGACAAAGAAGGTGAAAAGGACAAGGAAGGATCAGGGAAGAAGAAGAACAGTGGTGGTGGTGGTGGAGGGGGAGGAGGAGGAGACAGTAACGAAGGGGGAATACAGAAAATAGATTACAGCAGAATGGAGTATTTGCCACAATCTGCTTTTGGCTTGGGTCATGGTTATGGTTATGGTTATGGACACGGTCATATGGGTGGCTATGGCTATGTGCCGGTGTACCCGGAGCAGATGCACTTTCACTTGCATGCACCACCACCACAAATTTTCAGTGACGAGAACCCGAATGCTTGTTCTGTCATGTGA 903 0.5072 MGAKKKSGGGNGNKENENGTTTVVLKLDFHCDGCASKITRHLRALQGVETVKAESDAGKVTVTGKLDPVKVRDNLAEKMKKKVEIVSPQPKKDKDKDKEKEKEENKDAKTNNKNQDKKNKDKEVVATAVLKMALHCQGCLDRISKTVRKTKGVKEMAIDKEKETVTVKGTMDVKALAENLMEKLRRKVEVVPPKKEKEGDKEGEKDKEGSGKKKNSGGGGGGGGGGDSNEGGIQKIDYSRMEYLPQSAFGLGHGYGYGYGHGHMGGYGYVPVYPEQMHFHLHAPPPQIFSDENPNACSVM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01872 300 CDD HMA 134 189 IPR006121 GO:0046872
Viun11g01872 300 MobiDBLite consensus disorder prediction 80 120 - -
Viun11g01872 300 Pfam Heavy-metal-associated domain 29 82 IPR006121 GO:0046872
Viun11g01872 300 Pfam Heavy-metal-associated domain 133 189 IPR006121 GO:0046872
Viun11g01872 300 ProSiteProfiles Heavy-metal-associated domain profile. 125 196 IPR006121 GO:0046872
Viun11g01872 300 Coils Coil 91 120 - -
Viun11g01872 300 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 4 300 IPR044594 GO:0046872
Viun11g01872 300 ProSiteProfiles Heavy-metal-associated domain profile. 20 91 IPR006121 GO:0046872
Viun11g01872 300 CDD HMA 30 84 IPR006121 GO:0046872
Viun11g01872 300 SUPERFAMILY HMA, heavy metal-associated domain 128 185 IPR036163 GO:0046872
Viun11g01872 300 MobiDBLite consensus disorder prediction 187 233 - -
Viun11g01872 300 Gene3D - 19 94 - -
Viun11g01872 300 Gene3D - 122 198 - -
Viun11g01872 300 SUPERFAMILY HMA, heavy metal-associated domain 20 85 IPR036163 GO:0046872
Viun11g01872 300 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01872 Viun-Chr11 34618626 34620454 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01872 - - gsj:114377132 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01872 11 34618626 34620454 Viun11g01872 11 34618626 34620454 ECH