Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01858 ATGCCATTCCCAATGCTTCCTCTTCTCTCCCTTCTTGTACTCTCATCTATGATTTATTCTGGTTCTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTACTCCTATTAGCTTCAATCAAGGCTTTAAAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGGCTCTCTGACAATATGGCTAGACACTAGCTCAGGGAGTGGATTCAAGTCACTTCACTCTTACAACTCTGGTTACTTTGGTGCTGCAATTAAGCTTCATCCTGGTTACACTGCAGGAGTCATTACATCTCTCTACCTTTCAAACAACCAAGACCACCCCGGAAACCACGATGAAATTGACATAGAGTTCCTCGGTACCACGCCAGACAAACCATATGTCTTGCAGACAAATGTATACATCAGGGGAAGTGGAGATGGGAACATCATAGGAAGAGAGATGAGGTTTCATCTCTGGTTTGACCCAACACAGGATTTTCACAACTACGCAGTTCTATGGAAACCCTCTGAGTTAATATTTTTTGTGGATGATGTCCCAATAAGAAGGTATCCAAGGAAAAGTGAGGCCACATACCCTACAAGGCCAATGTATGTGTATGGGTCAATCTGGGATGCATCTTCTTGGGCAACAGAGGGTGGAAAATACAAAGCTGATTACAGATACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTCCAAGGTTGCACTAGTGAAAGCTCTCCCTCATGCCACCCACCTTCTGCATCTCCTTCTGGTTTTGGAAGTCTGAGTCCTCAGCAGTTCAGGGCCATGCAATGGGTCCAAAACAACTACATGGTGTACAACTACTGCCATGATCCTAGGAGAGACCACAATCTGATCCCAGAATGCTAA 891 0.4489 MPFPMLPLLSLLVLSSMIYSGSAQGPPSPGYYPSSKITPISFNQGFKNLWGPQHQRIDQGSLTIWLDTSSGSGFKSLHSYNSGYFGAAIKLHPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAVLWKPSELIFFVDDVPIRRYPRKSEATYPTRPMYVYGSIWDASSWATEGGKYKADYRYQPFIGRYKNFKLQGCTSESSPSCHPPSASPSGFGSLSPQQFRAMQWVQNNYMVYNYCHDPRRDHNLIPEC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01858 296 Pfam Glycosyl hydrolases family 16 43 225 IPR000757 GO:0004553|GO:0005975
Viun11g01858 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 41 296 IPR044791 GO:0004553
Viun11g01858 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 261 296 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Viun11g01858 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 296 IPR013320 -
Viun11g01858 296 Gene3D - 22 296 - -
Viun11g01858 296 FunFam Xyloglucan endotransglucosylase/hydrolase 29 296 - -
Viun11g01858 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 233 IPR000757 GO:0004553|GO:0005975
Viun11g01858 296 PIRSF EndGlu_transf 9 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01858 Viun-Chr11 34520587 34522343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01858 6 296 Glycoside Hydrolase AT3G44990 67.354 4.93e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01858 K08235 - gmx:100781528 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03341 5 43768202 43770175 Viun11g01858 11 34520587 34522343 PCT