Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01824 ATGGCTCCAAAACGTGGTGAGAAGTTGGTGGTGAAATCCACCAAGAAAGTTGTGGAATCGAGCGTGCAAGTAACGGTTGTAAGCAGCAGCAGCAGCAGAAGACAAACACGGGGAAGCAAAGAAACAGAAGAAGCAGAAGGTGGAGAAGAGCATGTGATGGTTATTCCCGTTGAAGAAGTGAATCCTCAAGTTCAAAAGGATTCACCTACCTCTGCCATTACTGATGAAAAAAAAGGTGAGAAAAAAAACAGCACTGGTGAAGGTGAAGATGGTGGAGTGCAGAATGAAGAGAAAGAGAAGGCAAGAACAGGAAAAGGGTGGAATGGGAAAGAGAGAAAAAGGGGGAAAAAGAAGGGAAGAAAAAGTGCAGAAGGGTATCAGAGGTATGTGTATAGGGTGTTGAAGCAGGTGCACCCTGAAATGGGAATATCTTCGAAATGCATGATTGTTCTGAACAATTTGATGAATGACATGTTTGAGAGATTGGCTGGTGAAGCTGCTAAGTTGAAGGATTACACTGGACACATGACATTGTCTTCGAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCAGGAGAGCTTGGGAAGCATGCCATTGCAGAAGGTGTGAAAGCTGTGAATAAATTCACCTCCTATGATACTGATGAATAG 654 0.4404 MAPKRGEKLVVKSTKKVVESSVQVTVVSSSSSRRQTRGSKETEEAEGGEEHVMVIPVEEVNPQVQKDSPTSAITDEKKGEKKNSTGEGEDGGVQNEEKEKARTGKGWNGKERKRGKKKGRKSAEGYQRYVYRVLKQVHPEMGISSKCMIVLNNLMNDMFERLAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSYDTDE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01824 217 PRINTS Histone H2B signature 145 165 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 PRINTS Histone H2B signature 126 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 PRINTS Histone H2B signature 184 197 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 PRINTS Histone H2B signature 197 210 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 PRINTS Histone H2B signature 167 184 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 MobiDBLite consensus disorder prediction 71 108 - -
Viun11g01824 217 SMART h2b3 116 212 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 MobiDBLite consensus disorder prediction 1 122 - -
Viun11g01824 217 PANTHER HISTONE H2B 76 212 IPR000558 GO:0000786|GO:0003677|GO:0030527
Viun11g01824 217 MobiDBLite consensus disorder prediction 36 53 - -
Viun11g01824 217 FunFam Histone H2B 70 213 - -
Viun11g01824 217 MobiDBLite consensus disorder prediction 16 35 - -
Viun11g01824 217 Gene3D Histone, subunit A 56 213 IPR009072 GO:0046982
Viun11g01824 217 Pfam Core histone H2A/H2B/H3/H4 67 189 IPR007125 GO:0003677
Viun11g01824 217 SUPERFAMILY Histone-fold 98 212 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01824 Viun-Chr11 34313966 34314923 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01824 K11252 - gmx:100786873 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01824 11 34313966 34314923 Viun11g01824 11 34313966 34314923 ECH